Image-Based Profiling / en Mon, 27 Jan 25 05:00:00 -0500 A genome-wide atlas of cell morphology reveals gene functions /news/genome-wide-atlas-cell-morphology-reveals-gene-functions <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Mon, 27 Jan 2025 10:00:00 +0000 adicorat 5558016 at #WhyIScience Q&A: A computational biologist uses physics to find hidden patterns in cells /news/whyiscience-qa-computational-biologist-uses-physics-find-hidden-patterns-cells <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Tue, 14 Nov 2023 14:00:00 +0000 adicorat 5555866 at A how-to for performing quantitative bioimaging /news/how-performing-quantitative-bioimaging <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Thu, 13 Jul 2023 15:29:09 +0000 makenziekohler 1282526 at New image-based cellular profiling tool peers deeply into metabolic biology /news/lipocyte-profiler-metabolic-biology-tool <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Fri, 30 Jun 2023 14:30:09 +0000 makenziekohler 1282386 at Scientists unveil the functional landscape of essential genes /news/scientists-unveil-functional-landscape-essential-genes <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Mon, 07 Nov 2022 16:05:51 +0000 tulrich@broadinstitute.org 1245906 at Scaling up cell imaging /news/scaling-cell-imaging <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Tue, 02 Aug 2022 16:56:36 +0000 aviveros@broadinstitute.org 1155366 at #WhyIScience Q&A: A computer scientist on the future of machine learning in biology /blog/whyiscience-qa-computer-scientist-future-machine-learning-biology <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Thu, 14 Jan 2021 20:15:11 +0000 kzusi@broadinstitute.org 731296 at Deep learning model assesses quality of stored blood /news/deep-learning-model-assesses-quality-stored-blood <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Mon, 24 Aug 2020 19:28:28 +0000 Corie Lok 642351 at Ó³»­´«Ã½ launches academic-industry cell imaging consortium to speed drug discovery and development /news/broad-institute-launches-academic-industry-cell-imaging-consortium-speed-drug-discovery-and <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Fri, 10 Jul 2020 14:00:00 +0000 kzusi@broadinstitute.org 631466 at A marriage of microscopy and machine learning /news/marriage-microscopy-and-machine-learning <span class="field field--name-title field--type-string field--label-hidden">TCGA Copy Number Portal</span> <div class="clearfix text-formatted field field--name-body field--type-text-with-summary field--label-hidden field__item"><p> TCGA Tumorscape is designed to facilitate the use and understanding of high resolution copy number data amassed from multiple cancer types (all generated through TCGA). It enables download and interactive viewing of cancer copy-number profiles across several dozen cancer types; gene-level queries to determine the rate and significance of alteration of every gene; and cancer-type-level queries to identify the significant regions of copy-number alteration.</p> </div> <span class="field field--name-uid field--type-entity-reference field--label-hidden"> <span>By Rose Circeo</span> </span> <span class="field field--name-created field--type-created field--label-hidden"><time datetime="2018-07-27T12:10:50-04:00" title="Friday, July 27, 2018 - 12:10" class="datetime">July 27, 2018</time> </span> <div class="field field--name-field-software-link field--type-link field--label-above"> <div class="field__label">Link</div> <div class="field__items"> <div class="field__item"><a href="http://portals.broadinstitute.org/tcga/home">TCGA Copy Number Portal</a></div> </div> </div> <div class="field field--name-field-taxonomy-topic field--type-entity-reference field--label-above"> <div class="field__label">Topic</div> <div class="field__items"> <div class="field__item">TCGA</div> <div class="field__item">Cancer</div> <div class="field__item">Sequence Analysis</div> <div class="field__item">cancer portals</div> <div class="field__item">copy number</div> </div> </div> <div class="field field--name-field-broad-tags field--type-entity-reference field--label-above"> <div class="field__label">Ó³»­´«Ã½ tags</div> <div class="field__items"> <div class="field__item"><a href="/broad-tags/cancer-program" hreflang="en">Cancer Program</a></div> <div class="field__item"><a href="/broad-tags/cancer" hreflang="en">Cancer</a></div> </div> </div> Mon, 13 Jan 2020 21:17:17 +0000 Corie Lok 626771 at