Salamzade R, Manson AL, Walker BJ, et al. Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. Genome Med. 2022;14(1):37. doi:10.1186/s13073-022-01040-y
Groussin M, Poyet M, Sistiaga A, et al. Elevated rates of horizontal gene transfer in the industrialized human microbiome. Cell. 2021;184(8):2053-2067.e18. doi:10.1016/j.cell.2021.02.052
Lee JW, T Y Chan C, Slomovic S, Collins JJ. Next-generation biocontainment systems for engineered organisms. Nat Chem Biol. 2018;14(6):530-537. doi:10.1038/s41589-018-0056-x
Kaufmann BB, Hung DT. The fast track to multidrug resistance. Mol Cell. 2010;37(3):297-8. doi:10.1016/j.molcel.2010.01.027
Rasmussen MD, Kellis M. Unified modeling of gene duplication, loss, and coalescence using a locus tree. Genome Res. 2012;22(4):755-65. doi:10.1101/gr.123901.111
Bansal MS, Alm EJ, Kellis M. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss. Bioinformatics. 2012;28(12):i283-91. doi:10.1093/bioinformatics/bts225
H Y Jiang R, Tyler BM. Mechanisms and evolution of virulence in oomycetes. Annu Rev Phytopathol. 2012;50:295-318. doi:10.1146/annurev-phyto-081211-172912
H Y Jiang R, de Bruijn I, Haas BJ, et al. Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica. PLoS Genet. 2013;9(6):e1003272. doi:10.1371/journal.pgen.1003272
Coyne MJ, Zitomersky NL, McGuire AM, Earl AM, Comstock LE. Evidence of extensive DNA transfer between bacteroidales species within the human gut. MBio. 2014;5(3):e01305-14. doi:10.1128/mBio.01305-14
Yoon EJ, Goussard S, Touchon M, et al. Origin in Acinetobacter guillouiae and dissemination of the aminoglycoside-modifying enzyme Aph(3’)-VI. MBio. 2014;5(5):e01972-14. doi:10.1128/mBio.01972-14