Data Release for Mammalian Genome Project

Project Data Release Summary - Mammalian Genome Project

This list represents the genomes that were used in the analysis of the Mammalian Genome Project (aka "29 Mammals"). These builds are not necessarily the most recent builds of an organism's genome (see here for those).

Unless otherwise stated, genome builds were sequenced at the Ó³»­´«Ã½. ALL genomes were assembled at the Ó³»­´«Ã½. For all genomes, links are provided to a project page, the assembly files, and NCBI's record for the latest build. When applicable, links are also provided for (for gene annotation) and (for data visualization).

Mammalian Genome Projects

Organism Assembly Status Genbank Accession Ensembl Annotation UCSC Browser Notes
Alpaca
Vicugna pacos
Complete 2x coverage, sequenced at WashU
 
Armadillo (Nine-banded)
Dasypus novemcinctus
Complete

2x coverage

Bushbaby
Otolemur garnettii
Complete 2x coverage
Cat
Felis catus
Complete 2x coverage, sequenced at Agencourt
 
Chimpanzee
Pan troglodytes
Complete Ensembl 7x coverage
Cow
Bos taurus
Complete Ensembl 7x coverage
Dog
Canis familiaris
Complete 7x coverage, anchored
Dolphin, Bottlenosed
Tursiops truncatus
Complete 2x coverage, sequenced at Baylor
 
Elephant, African Savannah
Loxodonta africana
Complete 7x coverage, anchoring in progress
Guinea Pig
Cavia porcellus
Complete 7x coverage
Hedgehog, European
Erinaceus europaeus
Complete 2x coverage
Horse
Equus caballus
Complete 7x coverage (no 2X exists)
Human
Homo sapiens
Complete Ensembl Deep
Kangaroo Rat
Dipodomys ordii
Complete 2x coverage, sequenced at Baylor
 
Macaque
Macaca mulatta
Complete Ensembl 2x coverage, sequenced at Baylor
 
Megabat (Fruitbat)
Pteropus vampyrus
Complete 2x coverage, sequenced at Baylor
 
Microbat, Little Brown
Myotis lucifugus
Low coverage (2x) complete 2x coverage
Mouse
Mus musculus
Complete Ensembl 2x coverage
Mouse Lemur
Microcebus murinus
Complete 2x coverage
Pika
Ochotona princeps
Complete 2x coverage
Rabbit, European
Oryctolagus cuniculus
Complete 7x coverage, anchored
Rat
Rattus norvegicus
Complete Ensembl 7x coverage
Rock Hyrax
Procavia capensis
Complete 2x coverage, sequenced at Baylor
 
Shrew, Common
Sorex araneus
Complete 2x coverage
Shrew, Tree
Tupaia belangeri
Complete 2x coverage
Sloth (Two-toed)
Choloepus hoffmanni
Complete 2x coverage, sequenced at WashU
 
Squirrel, Ground
Spermophilus tridecemlineatus
Complete 2x coverage
Tarsier
Tarsier syrichta
Complete 2x coverage, sequenced at Baylor
 
Tenrec (Lesser hedgehog)
Echinops telfari
Complete 2x coverage

 

For more information on these projects, please contact us at vertebrategenomes@broadinstitute.org.

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