Next-generation genotype imputation service and methods.

Nat Genet
Authors
Abstract

Genotype imputation is a key component of genetic association studies, where it increases power, facilitates meta-analysis, and aids interpretation of signals. Genotype imputation is computationally demanding and, with current tools, typically requires access to a high-performance computing cluster and to a reference panel of sequenced genomes. Here we describe improvements to imputation machinery that reduce computational requirements by more than an order of magnitude with no loss of accuracy in comparison to standard imputation tools. We also describe a new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity.

Year of Publication
2016
Journal
Nat Genet
Volume
48
Issue
10
Pages
1284-7
Date Published
2016 Oct
ISSN
1546-1718
DOI
10.1038/ng.3656
PubMed ID
27571263
PubMed Central ID
PMC5157836
Links
Grant list
R01 DA005147 / DA / NIDA NIH HHS / United States
R01 DA036216 / DA / NIDA NIH HHS / United States
R01 AA009367 / AA / NIAAA NIH HHS / United States
R01 HG000376 / HG / NHGRI NIH HHS / United States
U01 DA024417 / DA / NIDA NIH HHS / United States
R01 DA024417 / DA / NIDA NIH HHS / United States
R01 DA037904 / DA / NIDA NIH HHS / United States
R01 HG007022 / HG / NHGRI NIH HHS / United States
R01 HL117626 / HL / NHLBI NIH HHS / United States
R37 DA005147 / DA / NIDA NIH HHS / United States