RNAget: an API to securely retrieve RNA quantifications.

Bioinformatics (Oxford, England)
Authors
Abstract

SUMMARY: Large-scale sharing of genomic quantification data requires standardized access interfaces. In this Global Alliance for Genomics and Health project, we developed RNAget, an API for secure access to genomic quantification data in matrix form. RNAget provides for slicing matrices to extract desired subsets of data and is applicable to all expression matrix-format data, including RNA sequencing and microarrays. Further, it generalizes to quantification matrices of other sequence-based genomics such as ATAC-seq and ChIP-seq.AVAILABILITY AND IMPLEMENTATION: .

Year of Publication
2023
Journal
Bioinformatics (Oxford, England)
Volume
39
Issue
4
Date Published
04/2023
ISSN
1367-4811
DOI
10.1093/bioinformatics/btad126
PubMed ID
36897015
Links