Spatially resolved single-cell translatomics at molecular resolution.

Science (New York, N.Y.)
Authors
Abstract

The precise control of messenger RNA (mRNA) translation is a crucial step in posttranscriptional gene regulation of cellular physiology. However, it remains a challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolution. Here, we report the development of ribosome-bound mRNA mapping (RIBOmap), a highly multiplexed three-dimensional in situ profiling method to detect cellular translatome. RIBOmap profiling of 981 genes in HeLa cells revealed cell cycle-dependent translational control and colocalized translation of functional gene modules. We mapped 5413 genes in mouse brain tissues, yielding spatially resolved single-cell translatomic profiles for 119,173 cells and revealing cell type-specific and brain region-specific translational regulation, including translation remodeling during oligodendrocyte maturation. Our method detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks.

Year of Publication
2023
Journal
Science (New York, N.Y.)
Volume
380
Issue
6652
Pages
eadd3067
Date Published
06/2023
ISSN
1095-9203
DOI
10.1126/science.add3067
PubMed ID
37384709
Links