Multi-PGS enhances polygenic prediction by combining 937 polygenic scores.
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Abstract | The predictive performance of polygenic scores (PGS) is largely dependent on the number of samples available to train the PGS. Increasing the sample size for a specific phenotype is expensive and takes time, but this sample size can be effectively increased by using genetically correlated phenotypes. We propose a framework to generate multi-PGS from thousands of publicly available genome-wide association studies (GWAS) with no need to individually select the most relevant ones. In this study, the multi-PGS framework increases prediction accuracy over single PGS for all included psychiatric disorders and other available outcomes, with prediction R increases of up to 9-fold for attention-deficit/hyperactivity disorder compared to a single PGS. We also generate multi-PGS for phenotypes without an existing GWAS and for case-case predictions. We benchmark the multi-PGS framework against other methods and highlight its potential application to new emerging biobanks. |
Year of Publication | 2023
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Journal | Nature communications
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Volume | 14
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Issue | 1
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Pages | 4702
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Date Published | 08/2023
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ISSN | 2041-1723
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DOI | 10.1038/s41467-023-40330-w
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PubMed ID | 37543680
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