CellProfiler plugins - an easy image analysis platform integration for containers and Python tools.
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| Abstract | CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler-plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency-heavy. Here, we present an upgraded CellProfiler-plugins repository, an example of accessing containerized tools, improved documentation, and added citation/reference tools to facilitate the use and contribution of the community. This article is protected by copyright. All rights reserved. |
| Year of Publication | 2023
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| Journal | Journal of microscopy
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| Date Published | 09/2023
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| ISSN | 1365-2818
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| DOI | 10.1111/jmi.13223
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| PubMed ID | 37690102
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