Dosage amplification dictates oncogenic regulation by the lineage factor in lung adenocarcinoma.

bioRxiv : the preprint server for biology
Authors
Abstract

Amplified oncogene expression is a critical and widespread driver event in cancer, yet our understanding of how amplification-mediated elevated dosage mediates oncogenic regulation is limited. Here, we find that the most significant focal amplification event in lung adenocarcinoma (LUAD) targets a lineage super-enhancer near the lineage transcription factor. The super-enhancer is targeted by focal and co-amplification with , and activation or repression controls expression. We find that is a widespread dependency in LUAD cell lines, where NKX2-1 pioneers enhancer accessibility to drive a lineage addicted state in LUAD, and NKX2-1 confers persistence to EGFR inhibitors. Notably, we find that oncogenic NKX2-1 regulation requires expression above a minimum dosage threshold-NKX2-1 dosage below this threshold is insufficient for cell viability, enhancer remodeling, and TKI persistence. Our data suggest that copy-number amplification can be a gain-of-function alteration, wherein amplification elevates oncogene expression above a critical dosage required for oncogenic regulation and cancer cell survival.

Year of Publication
2023
Journal
bioRxiv : the preprint server for biology
Date Published
10/2023
DOI
10.1101/2023.10.26.563996
PubMed ID
37994369
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