Identification of clinically relevant T cell receptors for personalized T cell therapy using combinatorial algorithms.
Nature biotechnology
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Abstract | A central challenge in developing personalized cancer cell immunotherapy is the identification of tumor-reactive T cell receptors (TCRs). By exploiting the distinct transcriptomic profile of tumor-reactive T cells relative to bystander cells, we build and benchmark TRTpred, an antigen-agnostic in silico predictor of tumor-reactive TCRs. We integrate TRTpred with an avidity predictor to derive a combinatorial algorithm of clinically relevant TCRs for personalized T cell therapy and benchmark it in patient-derived xenografts. |
Year of Publication | 2024
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Journal | Nature biotechnology
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Date Published | 05/2024
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ISSN | 1546-1696
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DOI | 10.1038/s41587-024-02232-0
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PubMed ID | 38714897
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