Small-molecule binding and sensing with a designed protein family.
| Authors | |
| Abstract | The de novo design of small-molecule-binding proteins holds great promise as a potential tool to develop sensors on-demand for arbitrary small molecules. Here we combine deep learning and physics-based methods to generate a family of proteins with diverse and designable pocket geometries, which we employ to computationally design binders for six small-molecule targets. Biophysical characterization of the designed binders reveals nanomolar to low micromolar binding affinities and atomic-level design accuracy. Additionally, we use a cortisol binder to design a chemically induced dimerization (CID) system that enables the construction of a biosensor for cortisol detection. The approach described here demonstrates the potential of the NTF2 fold and deep learning-based protein design in sensor development, paving the way for future platforms to design binders and sensors for small molecules across analytical, environmental, and biomedical applications. |
| Year of Publication | 2026
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| Journal | Nature communications
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| Date Published | 03/2026
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| ISSN | 2041-1723
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| DOI | 10.1038/s41467-026-70953-8
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| PubMed ID | 41904144
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