Sliding on DNA: From Peptides to Small Molecules.

Angew Chem Int Ed Engl
Authors
Abstract

Many DNA binding proteins utilize one-dimensional (1D) diffusion along DNA to accelerate their DNA target recognition. Although 1D diffusion of proteins along DNA has been studied for decades, a quantitative understanding is only beginning to emerge and few chemical tools are available to apply 1D diffusion as a design principle. Recently, we discovered that peptides can bind and slide along DNA-even transporting cargo along DNA. Such molecules are known as molecular sleds. Here, to advance our understanding of structure-function relationships governing sequence nonspecific DNA interaction of natural molecular sleds and to explore the potential for controlling sliding activity, we test the DNA binding and sliding activities of chemically modified peptides and analogs, and show that synthetic small molecules can slide on DNA. We found new ways to control molecular sled activity, novel small-molecule synthetic sleds, and molecular sled activity in N-methylpyrrole/N-methylimidazole polyamides that helps explain how these molecules locate rare target sites.

Year of Publication
2016
Journal
Angew Chem Int Ed Engl
Volume
55
Issue
48
Pages
15110-15114
Date Published
2016 Nov 21
ISSN
1521-3773
DOI
10.1002/anie.201606768
PubMed ID
27813331
PubMed Central ID
PMC5217825
Links
Grant list
R01 CA133508 / CA / NCI NIH HHS / United States