The GenePattern Notebook Environment.

Cell Syst
Authors
Abstract

Interactive analysis notebook environments promise to streamline genomics research through interleaving text, multimedia, and executable code into unified, sharable, reproducible "research narratives." However, current notebook systems require programming knowledge, limiting their wider adoption by the research community. We have developed the GenePattern Notebook environment (), to our knowledge the first system to integrate the dynamic capabilities of notebook systems with an investigator-focused, easy-to-use interface that provides access to hundreds of genomic tools without the need to write code.

Year of Publication
2017
Journal
Cell Syst
Volume
5
Issue
2
Pages
149-151.e1
Date Published
2017 08 23
ISSN
2405-4712
DOI
10.1016/j.cels.2017.07.003
PubMed ID
28822753
PubMed Central ID
PMC5572818
Links
Grant list
R01 CA154480 / CA / NCI NIH HHS / United States
R01 GM074024 / GM / NIGMS NIH HHS / United States
U19 AI090023 / AI / NIAID NIH HHS / United States
U24 CA194107 / CA / NCI NIH HHS / United States