Genome-Wide CRISPR/Cas9 Screening for Identification of Cancer Genes in Cell Lines.
Methods Mol Biol
Authors | |
Abstract | In this protocol, pooled sgRNA libraries targeting thousands of genes are computationally designed, generated using microarray-based synthesis techniques, and packaged into lentiviral particles. Target cells of interest are transduced with the lentiviral sgRNA pools to generate a collection of knockout mutants-via Cas9-mediated genomic cleavage-and screened for a phenotype of interest. The relative abundance of each mutant in the population can be monitored over time through high-throughput sequencing of the integrated sgRNA expression cassettes. Using this technique, we outline strategies for the identification of cancer driver genes and genes mediating drug response. |
Year of Publication | 2019
|
Journal | Methods Mol Biol
|
Volume | 1907
|
Pages | 125-136
|
Date Published | 2019
|
ISSN | 1940-6029
|
DOI | 10.1007/978-1-4939-8967-6_10
|
PubMed ID | 30542996
|
Links | |
Additional Materials |