Recurrent TTN metatranscript-only c.39974-11T>G splice variant associated with autosomal recessive arthrogryposis multiplex congenita and myopathy.

Hum Mutat
Authors
Abstract

We present eight families with arthrogryposis multiplex congenita and myopathy bearing a TTN intron 213 extended splice-site variant (NM_001267550.1:c.39974-11T>G), inherited in trans with a second pathogenic TTN variant. Muscle-derived RNA studies of three individuals confirmed mis-splicing induced by the c.39974-11T>G variant; in-frame exon 214 skipping or use of a cryptic 3' splice-site effecting a frameshift. Confounding interpretation of pathogenicity is the absence of exons 213-217 within the described skeletal muscle TTN N2A isoform. However, RNA-sequencing from 365 adult human gastrocnemius samples revealed that 56% specimens predominantly include exons 213-217 in TTN transcripts (inclusion rate ≥66%). Further, RNA-sequencing of five fetal muscle samples confirmed that 4/5 specimens predominantly include exons 213-217 (fifth sample inclusion rate 57%). Contractures improved significantly with age for four individuals, which may be linked to decreased expression of pathogenic fetal transcripts. Our study extends emerging evidence supporting a vital developmental role for TTN isoforms containing metatranscript-only exons.

Year of Publication
2020
Journal
Hum Mutat
Volume
41
Issue
2
Pages
403-411
Date Published
2020 Feb
ISSN
1098-1004
DOI
10.1002/humu.23938
PubMed ID
31660661
Links
Grant list
HG008900 / HG / NHGRI NIH HHS / United States
APP1048816 / National Health and Medical Research Council
APP1080587 / National Health and Medical Research Council
APP1136197 / National Health and Medical Research Council
HG008900 / EY / NEI NIH HHS / United States
UM1 HG008900 / HG / NHGRI NIH HHS / United States
HG008900 / HG / NHGRI NIH HHS / United States
HG008900 / EY / NEI NIH HHS / United States
UM1 HG008900 / HG / NHGRI NIH HHS / United States