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Utility of Mycobacterium tuberculosis genome sequencing snapshots to assess transmission dynamics over time.

Yuen CM, Huang CC, Millones AK, et al. Utility of Mycobacterium tuberculosis genome sequencing snapshots to assess transmission dynamics over time. The Journal of infectious diseases. 2023. doi:10.1093/infdis/jiad515

Temporal development of the gut microbiome in early childhood from the TEDDY study.

Stewart CJ, Ajami NJ, O’Brien JL, et al. Temporal development of the gut microbiome in early childhood from the TEDDY study. Nature. 2018;562(7728):583-588. doi:10.1038/s41586-018-0617-x

Clustering the autisms using glutamate synapse protein interaction networks from cortical and hippocampal tissue of seven mouse models.

Brown EA, Lautz JD, Davis TR, et al. Clustering the autisms using glutamate synapse protein interaction networks from cortical and hippocampal tissue of seven mouse models. Mol Autism. 2018;9:48. doi:10.1186/s13229-018-0229-1

Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls.

Nielsen KL, Stegger M, Kiil K, et al. Whole-genome comparison of urinary pathogenic Escherichia coli and faecal isolates of UTI patients and healthy controls. Int J Med Microbiol. 2017;307(8):497-507. doi:10.1016/j.ijmm.2017.09.007

Genetic basis of individual differences in the response to small-molecule drugs in yeast.

Perlstein EO, Ruderfer DM, Roberts DC, Schreiber SL, Kruglyak L. Genetic basis of individual differences in the response to small-molecule drugs in yeast. Nat Genet. 2007;39(4):496-502. doi:10.1038/ng1991

Elucidation of structure-activity relationship pathways in biological screening data.

Wawer M, Peltason L, Bajorath J. Elucidation of structure-activity relationship pathways in biological screening data. J Med Chem. 2009;52(4):1075-80. doi:10.1021/jm8014102

Similarity-potency trees: a method to search for SAR information in compound data sets and derive SAR rules.

Wawer M, Bajorath J. Similarity-potency trees: a method to search for SAR information in compound data sets and derive SAR rules. J Chem Inf Model. 2010;50(8):1395-409. doi:10.1021/ci100197b

Modulators of hepatic lipoprotein metabolism identified in a search for small-molecule inducers of tribbles pseudokinase 1 expression.

Nagiec MM, Skepner AP, Negri J, et al. Modulators of hepatic lipoprotein metabolism identified in a search for small-molecule inducers of tribbles pseudokinase 1 expression. PLoS One. 2015;10(3):e0120295. doi:10.1371/journal.pone.0120295

Relationship of stereochemical and skeletal diversity of small molecules to cellular measurement space.

Kim YK, Arai MA, Arai T, et al. Relationship of stereochemical and skeletal diversity of small molecules to cellular measurement space. J Am Chem Soc. 2004;126(45):14740-5. doi:10.1021/ja048170p

Identifying biologically active compound classes using phenotypic screening data and sampling statistics.

Klekota J, Brauner E, Schreiber SL. Identifying biologically active compound classes using phenotypic screening data and sampling statistics. J Chem Inf Model. 2005;45(6):1824-36. doi:10.1021/ci050087d