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Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer.

Setlur SR, Mertz KD, Hoshida Y, et al. Estrogen-dependent signaling in a molecularly distinct subclass of aggressive prostate cancer. J Natl Cancer Inst. 2008;100(11):815-25. doi:10.1093/jnci/djn150

Semiautomated multiplexed quantum dot-based in situ hybridization and spectral deconvolution.

Byers RJ, Di Vizio D, O’connell F, et al. Semiautomated multiplexed quantum dot-based in situ hybridization and spectral deconvolution. J Mol Diagn. 2007;9(1):20-9. doi:10.2353/jmoldx.2007.060119

DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences.

Chang CY, LaBaer J. DNA polymorphism detector: an automated tool that searches for allelic matches in public databases for discrepancies found in clone or cDNA sequences. Bioinformatics. 2005;21(9):2133-5. doi:10.1093/bioinformatics/bti298

Analysis of sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors.

Balczerski B, Matsutani M, Castillo P, Osborne N, Stainier DYR, Crump G. Analysis of sphingosine-1-phosphate signaling mutants reveals endodermal requirements for the growth but not dorsoventral patterning of jaw skeletal precursors. Dev Biol. 2012;362(2):230-41. doi:10.1016/j.ydbio.2011.12.010

Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission.

Raghwani J, Rambaut A, Holmes EC, et al. Endemic dengue associated with the co-circulation of multiple viral lineages and localized density-dependent transmission. PLoS Pathog. 2011;7(6):e1002064. doi:10.1371/journal.ppat.1002064

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.

Trapnell C, Roberts A, Goff L, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc. 2012;7(3):562-78. doi:10.1038/nprot.2012.016

Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes.

Petit E, Giraud T, de Vienne DM, et al. Linkage to the mating-type locus across the genus Microbotryum: insights into nonrecombining chromosomes. Evolution. 2012;66(11):3519-33. doi:10.1111/j.1558-5646.2012.01703.x

Mining regulatory 5'UTRs from cDNA deep sequencing datasets.

Livny J, Waldor MK. Mining regulatory 5’UTRs from cDNA deep sequencing datasets. Nucleic Acids Res. 2010;38(5):1504-14. doi:10.1093/nar/gkp1121

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Konermann S, Brigham MD, Trevino AE, et al. Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex. Nature. 2015;517(7536):583-8. doi:10.1038/nature14136

High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics.

Rotem A, Ram O, Shoresh N, et al. High-Throughput Single-Cell Labeling (Hi-SCL) for RNA-Seq Using Drop-Based Microfluidics. PLoS One. 2015;10(5):e0116328. doi:10.1371/journal.pone.0116328