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High-throughput validation of ceRNA regulatory networks.

Chiu HS, Martínez MR, Bansal M, et al. High-throughput validation of ceRNA regulatory networks. BMC Genomics. 2017;18(1):418. doi:10.1186/s12864-017-3790-7

Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells.

Kearns NA, Genga RMJ, Enuameh MS, Garber M, Wolfe SA, Maehr R. Cas9 effector-mediated regulation of transcription and differentiation in human pluripotent stem cells. Development. 2014;141(1):219-23. doi:10.1242/dev.103341

Molecular Dissection of CD8 T-Cell Dysfunction.

Wang C, Singer M, Anderson AC. Molecular Dissection of CD8 T-Cell Dysfunction. Trends Immunol. 2017;38(8):567-576. doi:10.1016/j.it.2017.05.008

CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets.

Li Y, Jourdain AA, Calvo SE, Liu JS, Mootha VK. CLIC, a tool for expanding biological pathways based on co-expression across thousands of datasets. PLoS Comput Biol. 2017;13(7):e1005653. doi:10.1371/journal.pcbi.1005653

Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.

Dhingra P, Martinez-Fundichely A, Berger A, et al. Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network. Genome Biol. 2017;18(1):141. doi:10.1186/s13059-017-1266-3

An interaction map of circulating metabolites, immune gene networks, and their genetic regulation.

Nath AP, Ritchie SC, Byars SG, et al. An interaction map of circulating metabolites, immune gene networks, and their genetic regulation. Genome Biol. 2017;18(1):146. doi:10.1186/s13059-017-1279-y

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.

Saunders A, Macosko EZ, Wysoker A, et al. Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain. Cell. 2018;174(4):1015-1030.e16. doi:10.1016/j.cell.2018.07.028

Analyses of mRNA structure dynamics identify embryonic gene regulatory programs.

Beaudoin JD, Novoa EM, Vejnar CE, et al. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Nat Struct Mol Biol. 2018;25(8):677-686. doi:10.1038/s41594-018-0091-z

Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci.

Onuchic V, Lurie E, Carrero I, et al. Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci. Science. 2018;361(6409). doi:10.1126/science.aar3146

Principles and methods of in-silico prioritization of non-coding regulatory variants.

Lee PH, Lee C, Li X, Wee B, Dwivedi T, Daly M. Principles and methods of in-silico prioritization of non-coding regulatory variants. Hum Genet. 2018;137(1):15-30. doi:10.1007/s00439-017-1861-0