Lun DS, Rockwell G, Guido NJ, et al. Large-scale identification of genetic design strategies using local search. Mol Syst Biol. 2009;5:296. doi:10.1038/msb.2009.57
Mandlik A, Livny J, Robins WP, Ritchie JM, Mekalanos JJ, Waldor MK. RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression. Cell Host Microbe. 2011;10(2):165-74. doi:10.1016/j.chom.2011.07.007
Shell SS, Wang J, Lapierre P, et al. Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape. PLoS Genet. 2015;11(11):e1005641. doi:10.1371/journal.pgen.1005641
McGuire AM, Cochrane K, Griggs AD, et al. Evolution of invasion in a diverse set of Fusobacterium species. MBio. 2014;5(6):e01864. doi:10.1128/mBio.01864-14
Chao MC, Pritchard JR, Zhang YJ, et al. High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data. Nucleic Acids Res. 2013;41(19):9033-48. doi:10.1093/nar/gkt654
Bikard D, Jiang W, Samai P, Hochschild A, Zhang F, Marraffini LA. Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Res. 2013;41(15):7429-37. doi:10.1093/nar/gkt520
Kirkup BC, Chang L, Chang S, Gevers D, Polz MF. Vibrio chromosomes share common history. BMC Microbiol. 2010;10:137. doi:10.1186/1471-2180-10-137
Human Microbiome Jumpstart Reference Strains Consortium, Nelson KE, Weinstock GM, et al. A catalog of reference genomes from the human microbiome. Science. 2010;328(5981):994-9. doi:10.1126/science.1183605
Champion MD, Zeng Q, Nix EB, et al. Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathog. 2009;5(5):e1000459. doi:10.1371/journal.ppat.1000459