Pollo SMJ, Adebusuyi AA, Straub TJ, Foght JM, Zhaxybayeva O, Nesbø CL. Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C. Extremophiles. 2017;21(6):963-979. doi:10.1007/s00792-017-0956-9
Georgescu CH, Manson AL, Griggs AD, et al. SynerClust: a highly scalable, synteny-aware orthologue clustering tool. Microb Genom. 2018;4(11). doi:10.1099/mgen.0.000231
Lebreton F, van Schaik W, McGuire AM, et al. Emergence of epidemic multidrug-resistant Enterococcus faecium from animal and commensal strains. MBio. 2013;4(4). doi:10.1128/mBio.00534-13
McGuire AM, Weiner B, Park ST, et al. Comparative analysis of Mycobacterium and related Actinomycetes yields insight into the evolution of Mycobacterium tuberculosis pathogenesis. BMC Genomics. 2012;13:120. doi:10.1186/1471-2164-13-120
Peleg AY, de Breij A, Adams MD, et al. The success of acinetobacter species; genetic, metabolic and virulence attributes. PLoS One. 2012;7(10):e46984. doi:10.1371/journal.pone.0046984
Thomas JC, Godfrey PA, Feldgarden M, Robinson A. Draft genome sequences of Staphylococcus aureus sequence type 34 (ST34) and ST42 hybrids. J Bacteriol. 2012;194(10):2740-1. doi:10.1128/JB.00248-12
Bakker HC den, Desjardins CA, Griggs AD, et al. Evolutionary dynamics of the accessory genome of Listeria monocytogenes. PLoS One. 2013;8(6):e67511. doi:10.1371/journal.pone.0067511
Winglee K, McGuire AM, Maiga M, et al. Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction. PLoS Negl Trop Dis. 2016;10(1):e0004332. doi:10.1371/journal.pntd.0004332
Velayati AA, Abeel T, Shea T, et al. Populations of latent Mycobacterium tuberculosis lack a cell wall: Isolation, visualization, and whole-genome characterization. Int J Mycobacteriol. 2016;5(1):66-73. doi:10.1016/j.ijmyco.2015.12.001
Batzoglou S, Jaffe DB, Stanley K, et al. ARACHNE: a whole-genome shotgun assembler. Genome Res. 2002;12(1):177-89. doi:10.1101/gr.208902