Park DJ, Dudas G, Wohl S, et al. Ebola Virus Epidemiology, Transmission, and Evolution during Seven Months in Sierra Leone. Cell. 2015;161(7):1516-26. doi:10.1016/j.cell.2015.06.007
Newman RM, Lamers SL, Weiner B, et al. Genome Sequencing and Analysis of Geographically Diverse Clinical Isolates of Herpes Simplex Virus 2. J Virol. 2015;89(16):8219-32. doi:10.1128/JVI.01303-15
Gire SK, Goba A, Andersen KG, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345(6202):1369-72. doi:10.1126/science.1259657
Colgrove R, Diaz F, Newman R, et al. Genomic sequences of a low passage herpes simplex virus 2 clinical isolate and its plaque-purified derivative strain. Virology. 2014;450-451:140-5. doi:10.1016/j.virol.2013.12.014
Newman RM, Kuntzen T, Weiner B, et al. Whole genome pyrosequencing of rare hepatitis C virus genotypes enhances subtype classification and identification of naturally occurring drug resistance variants. J Infect Dis. 2013;208(1):17-31. doi:10.1093/infdis/jis679
Yang X, Charlebois P, Gnerre S, et al. De novo assembly of highly diverse viral populations. BMC Genomics. 2012;13:475. doi:10.1186/1471-2164-13-475
Malboeuf CM, Yang X, Charlebois P, et al. Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification. Nucleic Acids Res. 2013;41(1):e13. doi:10.1093/nar/gks794
Henn MR, Boutwell CL, Charlebois P, et al. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog. 2012;8(3):e1002529. doi:10.1371/journal.ppat.1002529
Vu TTH, Holmes EC, Duong V, et al. Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia. PLoS Negl Trop Dis. 2010;4(7):e757. doi:10.1371/journal.pntd.0000757
Hoang LT, Lynn DJ, Henn M, et al. The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults. J Virol. 2010;84(24):12982-94. doi:10.1128/JVI.01224-10