Xie X, Lu J, Kulbokas EJ, et al. Systematic discovery of regulatory motifs in human promoters and 3’ UTRs by comparison of several mammals. Nature. 2005;434(7031):338-45. doi:10.1038/nature03441
Lu J, Getz G, Miska EA, et al. MicroRNA expression profiles classify human cancers. Nature. 2005;435(7043):834-8. doi:10.1038/nature03702
Pedersen JS, Bejerano G, Siepel A, et al. Identification and classification of conserved RNA secondary structures in the human genome. PLoS Comput Biol. 2006;2(4):e33. doi:10.1371/journal.pcbi.0020033
Kumar MS, Lu J, Mercer KL, Golub TR, Jacks T. Impaired microRNA processing enhances cellular transformation and tumorigenesis. Nat Genet. 2007;39(5):673-7. doi:10.1038/ng2003
Schier AF. The maternal-zygotic transition: death and birth of RNAs. Science. 2007;316(5823):406-7. doi:10.1126/science.1140693
Ikeda S, Kong SW, Lu J, et al. Altered microRNA expression in human heart disease. Physiol Genomics. 2007;31(3):367-73. doi:10.1152/physiolgenomics.00144.2007
Stark A, Kheradpour P, Parts L, et al. Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes. Genome Res. 2007;17(12):1865-79. doi:10.1101/gr.6593807
Stark A, Lin MF, Kheradpour P, et al. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature. 2007;450(7167):219-32. doi:10.1038/nature06340
Janas MM, Novina CD. Not lost in translation: stepwise regulation of microRNA targets. EMBO J. 2012;31(11):2446-7. doi:10.1038/emboj.2012.119
Stark A, Bushati N, Jan CH, et al. A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands. Genes Dev. 2008;22(1):8-13. doi:10.1101/gad.1613108