MacCallum I, Przybylski D, Gnerre S, et al. ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biol. 2009;10(10):R103. doi:10.1186/gb-2009-10-10-r103
Lobritz MA, Belenky P, Porter CBM, et al. Antibiotic efficacy is linked to bacterial cellular respiration. Proc Natl Acad Sci U S A. 2015;112(27):8173-80. doi:10.1073/pnas.1509743112
Lander ES. Brave New Genome. N Engl J Med. 2015;373(1):5-8. doi:10.1056/NEJMp1506446
Karr JR, Williams AH, Zucker JD, et al. Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput Biol. 2015;11(5):e1004096. doi:10.1371/journal.pcbi.1004096
Anahtar MN, Byrne EH, Doherty KE, et al. Cervicovaginal bacteria are a major modulator of host inflammatory responses in the female genital tract. Immunity. 2015;42(5):965-76. doi:10.1016/j.immuni.2015.04.019
Shapiro RS. Antimicrobial-induced DNA damage and genomic instability in microbial pathogens. PLoS Pathog. 2015;11(3):e1004678. doi:10.1371/journal.ppat.1004678
Shishkin AA, Giannoukos G, Kucukural A, et al. Simultaneous generation of many RNA-seq libraries in a single reaction. Nat Methods. 2015;12(4):323-5. doi:10.1038/nmeth.3313
Rosen R, Hu L, Amirault J, Khatwa U, Ward DV, Onderdonk A. 16S community profiling identifies proton pump inhibitor related differences in gastric, lung, and oropharyngeal microflora. J Pediatr. 2015;166(4):917-23. doi:10.1016/j.jpeds.2014.12.067
Bhargava P, Collins JJ. Boosting bacterial metabolism to combat antibiotic resistance. Cell Metab. 2015;21(2):154-5. doi:10.1016/j.cmet.2015.01.012
Norman JM, Handley SA, Baldridge MT, et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell. 2015;160(3):447-60. doi:10.1016/j.cell.2015.01.002