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Data, Software and Tools (archival)

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Project	Type
	Next Generation Tools, error correction, ReadClean454, viral
	regulatory regions, machine learning, HiDRA
shRNA Library

	Sequence Analysis, Alignment
Spines	Sequence Analysis, Alignment, Tool Suites
	Genetic Analysis
	Genetic Analysis, genetic variation

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ӳ��ý's gene-editing technologies—CRISPR-Cas9, base editing, and prime editing—are being tested in more than 25 clinical trials to treat or cure leukemias, rare genetic diseases, high cholesterol, and other conditions.

NIH-funded discoveries from the ӳ��ý are powering nearly 20 clinical trials from companies testing new treatments for diseases like cancer and heart disease.

ӳ��ý developed a technology — partly supported by NIH funding — that can detect trace amounts of cancer DNA from blood tests and help cancer patients find out their risk of disease recurrence earlier.

Using NIH funding, the ӳ��ý’s Rare Genomes Project has worked with more than 1,300 families from all 50 U.S. states to diagnose rare genetic diseases.

ӳ��ý Clinical Labs has directly partnered with tens of thousands of cancer patients to analyze their DNA and accelerate research.

During the COVID-19 pandemic, ӳ��ý launched a large-scale diagnostic testing lab that processed over 37 million tests and saved state and federal programs nearly $2 billion.

The ӳ��ý's Cancer Dependency Map helps cancer researchers and drug developers discover therapeutic targets for new cancer treatments.

gnomAD, a large human genetic variant reference database developed by the ӳ��ý with NIH funding, has contributed to over 13 million genetic disease diagnoses since its launch in 2014.

Datasets generated at the ӳ��ý were used to train AlphaGenome, a cutting-edge AI model from Google DeepMind that predicts how genetic variants affect gene regulation.

the FDA granted accelerated approval for a lung cancer drug that was developed with ӳ��ý science and is for patients who otherwise had few treatment options.

David Liu and his team used NIH funding to invent precise gene-editing technologies, including one that may vastly improve access to genetic therapies for patients with rare disease.

NIH-funded ӳ��ý research is shedding new light on the biological roots of many diseases, including Alzheimer’s, Parkinson’s, and Huntington’s disease.

Scientists with ӳ��ý’s Stanley Center for Psychiatric Research have found key genetic factors for schizophrenia and bipolar disorder.

ӳ��ý scientists are using AI to design new antibiotics and other drugs, predict drug toxicity, and pinpoint genes, molecules, and cells that might be causing disease.

ӳ��ý Clinical Labs has sequenced nearly 900,000 whole human genomes, producing, on average, one human genome sequence every three minutes.

ӳ��ý Clinical Labs developed a new method for genome sequencing that costs 75 percent less than existing methods.

ӳ��ý Clinical Labs is the largest genome sequencing center of its kind in the world.

ӳ��ý Clinical Labs has partnered with MyOme and Southern Research Institute in Birmingham, Alabama to provide free genetic tests to people in Alabama.

ӳ��ý Clinical Labs has partnered with Mass General Brigham and Everygene to provide no-cost genetic testing to people throughout the US with cardiomyopathy, a disorder that can cause sudden cardiac death.

ӳ��ý Clinical labs and Mass General Brigham used data from NIH’s All of Us program to develop a genetic test that predicts risk of eight different heart conditions. This test is now available to patients.

Thanks to NIH funding, ӳ��ý Clinical Labs is collaborating with scientists across the U.S. to sequence DNA from tens of thousands of children with cancer and birth defects to study common biological pathways.

ӳ��ý Clinical Labs holds the world record for fastest DNA sequencing, completing whole genome sequencing and analysis in less than four hours at their facility in Burlington, Massachusetts.

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Affiliation
-ӳ��ý Trauma Initiative
-ӳ��ý Clinical Labs
-ӳ��ý Global Health Initiative
-ӳ��ý Summer Research Program
-ӳ��ý Summer Scholars Program
-Center for Integrated Solutions to Infectious Diseases
-Count Me In
-Director’s Perspectives
-Epigenomics
-Eric and Wendy Schmidt Center
-Erin Chen Lab
-Fei Chen Lab
-Gene Regulation Observatory
-Global Alliance for Genomics and Health
-Immunology Program
-Liu Lab
-Merkin Institute for Transformative Technologies in Healthcare
-NeuroDevelopmental Variability Initiative
-Novo Nordisk Foundation Center for Genomic Mechanisms of Disease
-Office of Inclusion, Diversity, Equity, and Allyship
-Optical Profiling Platform
-Peng Lab
-Sellers Lab
-Sheng Lab
-Stanley Global
-Uhler Lab
-Wang Lab
-Food Allergy Science Initiative (FASI)
-Gerstner Center for Cancer Diagnostics
-HCA
-NeuroGap
-Precision Cardiology Laboratory
-Center for the Development of Therapeutics
-Data Sciences Platform
-Cancer Program
-Carlos Slim Center for Health Research
-Cell Circuits Program
-Chemical Biology and Therapeutics Science Program
-Genetic Perturbation Platform
-Genomics Platform
-Imaging Platform
-Klarman Cell Observatory
-Medical and Population Genetics Program
-Metabolism Program
-Metabolomics Platform
-Infectious Disease and Microbiome Program
-Proteomics Platform
-Spatial Technology Platform
-Stanley Center for Psychiatric Research
-Blainey Lab
-Golub Lab
-Hung Lab
-Lander Lab
-Schreiber Lab
-Xavier Lab
-Zhang Lab
-Barrett Lab
Explainers
-Creating tools to generate data insights
-Delivering gene-based therapies
-Drug discovery
-Genomic epidemiology
-Machine learning
-Spatial -omics
-Industrial partnerships
-Human Cell Atlas: Reading biology
-Human Cell Atlas: International collaboration
-Human Cell Atlas: Data Coordination Platform
-Global Alliance for Genomics and Health
-Genomics Platform
-Gene editing
-Food allergies
-Drug Repurposing Hub
-Connecting variants to functions
-Cloud computing
-Cancer Dependency Map
-Blood biopsies
-Aggregating and harmonizing data
-Inflammatory bowel disease
-Licensing data, tools, and technologies
-Our culture
-Patients as partners
-Psychiatric disease
-Using genomics to predict disease risk
-Philanthropic partnerships
-SHERLOCK
-Single cell genomics
-Understanding kidney disease
Diseases
-Aging
-Inflammatory bowel disease
-Antibiotic resistance
-Autism
-Blood disorders
-Cancer
-Eating disorders
-Infectious Disease
-Liver Disease
-Metabolic Disease
-Microbiome
-Mitochondrial disease
-Muscular Disorders
-Neurodegeneration
-Neurodevelopmental conditions
-Skin disorders
-Trauma
-Coronavirus
-Cardiovascular disease
-Diabetes
-Obesity
-Heart Disease
-Immunological Disease
-Brain Health
-Rare Disease
-Kidney Disease
Technology/Topic
-Artificial intelligence
-Autoimmunity
-Blood Biopsy
-Genome regulation
-Metabolism
-Neuroscience
-Public health
-Single molecule
-Clinical genomics
-Clinical trials
-Data science
-Diagnostics
-Diversity, equity, inclusion and belonging
-DNA sequencing
-Drug discovery
-Gene therapy
-Gene-based therapy delivery
-Genotyping
-GWAS
-Imaging
-Immunology
-Machine Learning
-Metabolomics
-Newborn sequencing
-Pandemic preparedness
-Proteomics
-Public engagement
-RNA sequencing
-Spatial -omics
-Transcriptomics
-Whole Exome Sequencing
-Polygenetic scoring
-Licensing
-DepMap
-Cloud Computing
-Cell-Line Profiling
-Drug Repurposing Hub
-Gene-Expression Profiling
-CRISPR
-High-Throughput Screening
-Image-Based Profiling
-Mass Spectrometry
-Network Analysis
-RNAi
-Single Cell
-Small Molecules
-Therapeutics
-Synthetic biology
-Vertebrate biology
-Viral genomics
People
-Alex Bloemendal
-Alex Burgin
-Alex Shalek
-Alexandra-Chloé Villani
-Ana Anderson
-Andreas Gnirke
-Andrew Aguirre
-Angela Koehler
-Anna Greka
-Anne Carpenter
-Anne O'Donnell Luria
-Anthony Philippakis
-Arlene Sharpe
-Ashlee Earl
-Barbara Kahn
-Ben Deverman
-Ben Neale
-Beth Stevens
-Bronwyn MacInnis
-Bruce Birren
-Caroline Uhler
-Cathy Wu
-Cigall Kadoch
-Clary Clish
-Cotton Seed
-Cynthia Morton
-Daniel Graham
-David Root
-Deborah Hung
-Dyann Wirth
-Ed Scolnick
-Eliezer Van Allen
-Elise Robinson
-Emily Balskus
-Eric Alm
-Eric Banks
-Erin Chen
-Evan Macosko
-Fei Chen
-Gord Fishell
-Guoping Feng
-Hailiang Huang
-Heidi Rehm
-Jason Buenrostro
-Jen Pan
-Joel Hirschhorn
-John Doench
-Jose Florez
-Jose Florez
-Joshua Levin
-Karestan Koenen
-Kimberly Stegmaier
-Kristin Ardlie
-Laura Kiessling
-Mario Suvà
-Martin Aryee
-Matthew Meyerson
-Matthew Vander Heiden
-Melina Claussnitzer
-Michael Talkowski
-Miguel Rivera
-Morgan Sheng
-Niall Lennon
-Noam Shoresh
-Paola Arlotta
-Patrick Ellinor
-Paul Blainey
-Pratiti "Mimi" Bandopadhayay
-Sam Peng
-Sangeeta Bhatia
-Shamil Sunyaev
-Sheila Dodge
-Soumya Raychaudhuri
-Stacey Gabriel
-Steve Carr
-Vamsi Mootha
-Vijay Kuchroo
-William Hahn
-William Sellers
-Xiao Wang
-Brad Bernstein
-Jim Collins
-Paul Clemons
-Mark Daly
-Ben Ebert
-Gad Getz
-Todd Golub
-Nir Hacohen
-Steven Hyman
-Eric Lander
-David Liu
-Steve McCarroll
-Evan Rosen
-Pardis Sabeti
-Stuart Schreiber
-Feng Zhang
-Ramnik Xavier
News and Media
Scientific Areas
Services
Archive
-Sequencing
-ӳ��ý Technology Labs
-FAA
-MUC1
-Kevin Eggan
-Sekar Kathiresan
-Center of Excellence in Genomic Science
-Daniel MacArthur
-Genome Regulation, Cellular Circuitry and Epigenomics
-Aviv Regev
-Genome biology programs
-Genome regulation, cell circuitry, and epigenomics
-Genome Sequencing and Analysis Program
-Infectious Disease and Microbiome
-Aggregating Data
-Heiman Lab
-Regev Lab

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Data, Software and Tools (archival)

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