BGT: efficient and flexible genotype query across many samples.
Bioinformatics
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| Abstract | UNLABELLED: BGT is a compact format, a fast command line tool and a simple web application for efficient and convenient query of whole-genome genotypes and frequencies across tens to hundreds of thousands of samples. On real data, it encodes the haplotypes of 32 488 samples across 39.2 million SNPs into a 7.4 GB database and decodes up to 420 million genotypes per CPU second. The high performance enables real-time responses to complex queries. AVAILABILITY AND IMPLEMENTATION: . |
| Year of Publication | 2016
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| Journal | Bioinformatics
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| Volume | 32
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| Issue | 4
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| Pages | 590-2
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| Date Published | 2016 Feb 15
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| ISSN | 1367-4811
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| DOI | 10.1093/bioinformatics/btv613
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| PubMed ID | 26500154
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| Grant list | GM100233 / GM / NIGMS NIH HHS / United States
U54HG003037 / HG / NHGRI NIH HHS / United States
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