DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader.

Nat Genet
Authors
Keywords
Abstract

The DNA replication machinery is an important target for antibiotic development in increasingly drug-resistant bacteria, including Mycobacterium tuberculosis. Although blocking DNA replication leads to cell death, disrupting the processes used to ensure replication fidelity can accelerate mutation and the evolution of drug resistance. In Escherichia coli, the proofreading subunit of the replisome, the É› exonuclease, is essential for high-fidelity DNA replication; however, we find that the corresponding subunit is completely dispensable in M. tuberculosis. Rather, the mycobacterial replicative polymerase DnaE1 itself encodes an editing function that proofreads DNA replication, mediated by an intrinsic 3'-5' exonuclease activity within its PHP domain. Inactivation of the DnaE1 PHP domain increases the mutation rate by more than 3,000-fold. Moreover, phylogenetic analysis of DNA replication proofreading in the bacterial kingdom suggests that E. coli is a phylogenetic outlier and that PHP domain-mediated proofreading is widely conserved and indeed may be the ancestral prokaryotic proofreader.

Year of Publication
2015
Journal
Nat Genet
Volume
47
Issue
6
Pages
677-81
Date Published
2015 Jun
ISSN
1546-1718
URL
DOI
10.1038/ng.3269
PubMed ID
25894501
PubMed Central ID
PMC4449270
Links
Grant list
AI109755-01 / AI / NIAID NIH HHS / United States
1DP20D001378 / DP / NCCDPHP CDC HHS / United States
U19 AI076217 / AI / NIAID NIH HHS / United States
U19 AI109755 / AI / NIAID NIH HHS / United States
U19AI076217 / AI / NIAID NIH HHS / United States
P41 RR001209 / RR / NCRR NIH HHS / United States
MC_U105197143 / Medical Research Council / United Kingdom