Billmyre B, Croll D, Li W, et al. Highly recombinant VGII Cryptococcus gattii population develops clonal outbreak clusters through both sexual macroevolution and asexual microevolution. MBio. 2014;5(4):e01494-14. doi:10.1128/mBio.01494-14
Livny J, Zhou X, Mandlik A, Hubbard T, Davis BM, Waldor MK. Comparative RNA-Seq based dissection of the regulatory networks and environmental stimuli underlying Vibrio parahaemolyticus gene expression during infection. Nucleic Acids Res. 2014;42(19):12212-23. doi:10.1093/nar/gku891
Ma LJ, van der Does C, Borkovich KA, et al. Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature. 2010;464(7287):367-73. doi:10.1038/nature08850
McGuire AM, Cochrane K, Griggs AD, et al. Evolution of invasion in a diverse set of Fusobacterium species. MBio. 2014;5(6):e01864. doi:10.1128/mBio.01864-14
Ford CB, Funt JM, Abbey D, et al. The evolution of drug resistance in clinical isolates of Candida albicans. Elife. 2015;4:e00662. doi:10.7554/eLife.00662
Nierman WC, Pain A, Anderson MJ, et al. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature. 2005;438(7071):1151-6. doi:10.1038/nature04332
Yu Y, Kim S, Chua HH, et al. Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis. BMC Microbiol. 2006;6:46. doi:10.1186/1471-2180-6-46
McAdam PR, Templeton KE, Edwards GF, et al. Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus. Proc Natl Acad Sci U S A. 2012;109(23):9107-12. doi:10.1073/pnas.1202869109
Peleg AY, de Breij A, Adams MD, et al. The success of acinetobacter species; genetic, metabolic and virulence attributes. PLoS One. 2012;7(10):e46984. doi:10.1371/journal.pone.0046984
Winglee K, McGuire AM, Maiga M, et al. Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction. PLoS Negl Trop Dis. 2016;10(1):e0004332. doi:10.1371/journal.pntd.0004332