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Publications

Functional genomics of stromal cells in chronic inflammatory diseases.

Slowikowski K, Wei K, Brenner MB, Raychaudhuri S. Functional genomics of stromal cells in chronic inflammatory diseases. Curr Opin Rheumatol. 2018;30(1):65-71. doi:10.1097/BOR.0000000000000455

Phosphorylation of threonine residues on Shc promotes ligand binding and mediates crosstalk between MAPK and Akt pathways in breast cancer cells.

Suen KM, Lin CC, Seiler C, et al. Phosphorylation of threonine residues on Shc promotes ligand binding and mediates crosstalk between MAPK and Akt pathways in breast cancer cells. Int J Biochem Cell Biol. 2018;94:89-97. doi:10.1016/j.biocel.2017.11.014

Allergen-specific IgG antibody signaling through FcγRIIb promotes food tolerance.

Burton OT, Tamayo JM, Stranks AJ, Koleoglou KJ, Oettgen HC. Allergen-specific IgG antibody signaling through FcγRIIb promotes food tolerance. J Allergy Clin Immunol. 2018;141(1):189-201.e3. doi:10.1016/j.jaci.2017.03.045

Developing High-Throughput Assays to Analyze and Screen Electrophysiological Phenotypes.

Pan JQ, Baez-Nieto D, Allen A, Wang HR, Cottrell JR. Developing High-Throughput Assays to Analyze and Screen Electrophysiological Phenotypes. Methods Mol Biol. 2018;1787:235-252. doi:10.1007/978-1-4939-7847-2_18

Development of a formaldehyde biosensor with application to synthetic methylotrophy.

Woolston BM, Roth T, Kohale I, Liu DR, Stephanopoulos G. Development of a formaldehyde biosensor with application to synthetic methylotrophy. Biotechnol Bioeng. 2018;115(1):206-215. doi:10.1002/bit.26455

The Role of Gut Microbiome in the Pathogenesis of Prostate Cancer: A Prospective, Pilot Study.

Golombos DM, Ayangbesan A, O’Malley P, et al. The Role of Gut Microbiome in the Pathogenesis of Prostate Cancer: A Prospective, Pilot Study. Urology. 2018;111:122-128. doi:10.1016/j.urology.2017.08.039

Rate of Change of Premeal Glucose Measured by Continuous Glucose Monitoring Predicts Postmeal Glycemic Excursions in Patients With Type 1 Diabetes: Implications for Therapy.

Majithia AR, Wiltschko AB, Zheng H, Walford GA, Nathan DM. Rate of Change of Premeal Glucose Measured by Continuous Glucose Monitoring Predicts Postmeal Glycemic Excursions in Patients With Type 1 Diabetes: Implications for Therapy. J Diabetes Sci Technol. 2018;12(1):76-82. doi:10.1177/1932296817725756

Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler.

Bray MA, Carpenter AE. Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler. Methods Mol Biol. 2018;1683:89-112. doi:10.1007/978-1-4939-7357-6_7

Combining morphological and migration profiles of in vitro time-lapse data.

Becker T, Caicedo J, Singer S, weckmann M, AE C. Combining morphological and migration profiles of in vitro time-lapse data. In: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018). ; 2018. doi:10.1109/ISBI.2018.8363731

Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline.

Tasaki S, Gaiteri C, Mostafavi S, et al. Multi-omic Directed Networks Describe Features of Gene Regulation in Aged Brains and Expand the Set of Genes Driving Cognitive Decline. Front Genet. 2018;9:294. doi:10.3389/fgene.2018.00294