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Publications

PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes.

Gregor I, Dröge J, Schirmer M, Quince C, McHardy AC. PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes. PeerJ. 2016;4:e1603. doi:10.7717/peerj.1603

Metabolomic Profiles of Body Mass Index in the Framingham Heart Study Reveal Distinct Cardiometabolic Phenotypes.

Ho JE, Larson MG, Ghorbani A, et al. Metabolomic Profiles of Body Mass Index in the Framingham Heart Study Reveal Distinct Cardiometabolic Phenotypes. PLoS One. 2016;11(2):e0148361. doi:10.1371/journal.pone.0148361

Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis.

Krueger AS, Munck C, Dantas G, et al. Simulating Serial-Target Antibacterial Drug Synergies Using Flux Balance Analysis. PLoS One. 2016;11(1):e0147651. doi:10.1371/journal.pone.0147651

Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance.

Ogbunugafor B, Wylie S, Diakite I, Weinreich DM, Hartl DL. Adaptive Landscape by Environment Interactions Dictate Evolutionary Dynamics in Models of Drug Resistance. PLoS Comput Biol. 2016;12(1):e1004710. doi:10.1371/journal.pcbi.1004710

Toward clinical genomics in everyday medicine: perspectives and recommendations.

Delaney SK, Hultner ML, Jacob HJ, et al. Toward clinical genomics in everyday medicine: perspectives and recommendations. Expert Rev Mol Diagn. 2016;16(5):521-32. doi:10.1586/14737159.2016.1146593

Consent Codes: Upholding Standard Data Use Conditions.

Dyke SOM, Philippakis AA, De Argila JR, et al. Consent Codes: Upholding Standard Data Use Conditions. PLoS Genet. 2016;12(1):e1005772. doi:10.1371/journal.pgen.1005772

Neoepitopes and CD3-Positive and CD8-Positive Cells in Polymerase e-Mutated and Microsatellite-Instable Endometrial Cancers--Reply.

Howitt BE, Shukla SA, Konstantinopoulos PA. Neoepitopes and CD3-Positive and CD8-Positive Cells in Polymerase e-Mutated and Microsatellite-Instable Endometrial Cancers--Reply. JAMA Oncol. 2016;2(1):141-2. doi:10.1001/jamaoncol.2015.3903

Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction.

Winglee K, McGuire AM, Maiga M, et al. Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction. PLoS Negl Trop Dis. 2016;10(1):e0004332. doi:10.1371/journal.pntd.0004332

Development of Soft Tissue Sarcomas in Ribosomal Proteins L5 and S24 Heterozygous Mice.

Kazerounian S, Ciarlini PDSC, Yuan D, et al. Development of Soft Tissue Sarcomas in Ribosomal Proteins L5 and S24 Heterozygous Mice. J Cancer. 2016;7(1):32-6. doi:10.7150/jca.13292

Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.

Hoofnagle AN, Whiteaker JR, Carr SA, et al. Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays. Clin Chem. 2016;62(1):48-69. doi:10.1373/clinchem.2015.250563