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Publications

Metrics reloaded: recommendations for image analysis validation.

Maier-Hein L, Reinke A, Godau P, et al. Metrics reloaded: recommendations for image analysis validation. Nature methods. 2024. doi:10.1038/s41592-023-02151-z

Horizontal gene transfer after faecal microbiota transplantation in adolescents with obesity.

Behling AH, Wilson BC, Ho D, Cutfield WS, Vatanen T, O’Sullivan JM. Horizontal gene transfer after faecal microbiota transplantation in adolescents with obesity. Microbiome. 2024;12(1):26. doi:10.1186/s40168-024-01748-6

Relationship of fat mass ratio - a biomarker for lipodystrophy - with cardiometabolic traits.

Agrawal S, Luan J, Cummings BB, Weiss E, Wareham NJ, Khera A V. Relationship of fat mass ratio - a biomarker for lipodystrophy - with cardiometabolic traits. Diabetes. 2024. doi:10.2337/db23-0575

The Role of the Microbiome in the Etiopathogenesis of Colon Cancer.

Tekle GE, Andreeva N, Garrett WS. The Role of the Microbiome in the Etiopathogenesis of Colon Cancer. Annual review of physiology. 2024;86:453-478. doi:10.1146/annurev-physiol-042022-025619

Divergent opioid-mediated suppression of inhibition between hippocampus and neocortex across species and development.

Caccavano AP, Kimmel S, Vlachos A, et al. Divergent opioid-mediated suppression of inhibition between hippocampus and neocortex across species and development. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.20.576455

Refinement of a published gene-physical activity interaction impacting HDL-cholesterol: role of sex and lipoprotein subfractions.

Westerman KE, Kilpeläinen TO, Sevilla-Gonzalez M, et al. Refinement of a published gene-physical activity interaction impacting HDL-cholesterol: role of sex and lipoprotein subfractions. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.01.23.24301689

Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications.

Ctortecka C, Clark NM, Boyle B, et al. Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.20.576369

DeepRegFinder: deep learning-based regulatory elements finder.

Ramakrishnan A, Wangensteen G, Kim S, Nestler EJ, Shen L. DeepRegFinder: deep learning-based regulatory elements finder. Bioinformatics advances. 2024;4(1):vbae007. doi:10.1093/bioadv/vbae007

Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis.

Meng Q, Zhao Y, Xu M, et al. Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis. Frontiers in immunology. 2024;15:1287632. doi:10.3389/fimmu.2024.1287632

RAS/RAF co-mutation and ERBB2 copy number modulates HER2 heterogeneity and responsiveness to HER2-directed therapy in colorectal cancer.

Singh H, Sahgal P, Kapner K, et al. RAS/RAF co-mutation and ERBB2 copy number modulates HER2 heterogeneity and responsiveness to HER2-directed therapy in colorectal cancer. Clinical cancer research : an official journal of the American Association for Cancer Research. 2024. doi:10.1158/1078-0432.CCR-23-2581