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Publications

A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus.

Spisák S, Tisza V, Nuzzo PV, et al. A biallelic multiple nucleotide length polymorphism explains functional causality at 5p15.33 prostate cancer risk locus. Nature communications. 2023;14(1):5118. doi:10.1038/s41467-023-40616-z

Partial gene suppression improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethal.

Krill-Burger M, Dempster JM, Borah AA, et al. Partial gene suppression improves identification of cancer vulnerabilities when CRISPR-Cas9 knockout is pan-lethal. Genome biology. 2023;24(1):192. doi:10.1186/s13059-023-03020-w

Ether lipid biosynthesis promotes lifespan extension and enables diverse pro-longevity paradigms in .

Cedillo L, Ahsan FM, Li S, et al. Ether lipid biosynthesis promotes lifespan extension and enables diverse pro-longevity paradigms in . eLife. 2023;12. doi:10.7554/eLife.82210

An atlas of associations between 14 micronutrients and 22 cancer outcomes: Mendelian randomization analyses.

Kim JY, Song M, Kim MS, et al. An atlas of associations between 14 micronutrients and 22 cancer outcomes: Mendelian randomization analyses. BMC medicine. 2023;21(1):316. doi:10.1186/s12916-023-03018-y

GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data.

Babadi M, Fu JM, Lee SK, et al. GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data. Nature genetics. 2023. doi:10.1038/s41588-023-01449-0

Bioinformatics in urology - molecular characterization of pathophysiology and response to treatment.

Gheinani AH, Kim J, You S, Adam RM. Bioinformatics in urology - molecular characterization of pathophysiology and response to treatment. Nature reviews. Urology. 2023. doi:10.1038/s41585-023-00805-3

Base Editor Scanning Reveals Activating Mutations of DNMT3A.

Garcia EM, Lue NZ, Liang JK, et al. Base Editor Scanning Reveals Activating Mutations of DNMT3A. ACS chemical biology. 2023. doi:10.1021/acschembio.3c00257

Development and validation of a risk prediction model for post-polypectomy colorectal cancer in the USA: a prospective cohort study.

Knudsen MD, Wang K, Wang L, et al. Development and validation of a risk prediction model for post-polypectomy colorectal cancer in the USA: a prospective cohort study. EClinicalMedicine. 2023;62:102139. doi:10.1016/j.eclinm.2023.102139

AliGater: a framework for the development of bioinformatic pipelines for large-scale, high-dimensional cytometry data.

Ekdahl L, Arrizabalaga AL, Ali Z, Cafaro C, Portilla AL de L, Nilsson B. AliGater: a framework for the development of bioinformatic pipelines for large-scale, high-dimensional cytometry data. Bioinformatics advances. 2023;3(1):vbad103. doi:10.1093/bioadv/vbad103

Multi-ancestry meta-analysis identifies 5 novel loci for ischemic stroke and reveals heterogeneity of effects between sexes and ancestries.

Surakka I, Wu KH, Hornsby W, et al. Multi-ancestry meta-analysis identifies 5 novel loci for ischemic stroke and reveals heterogeneity of effects between sexes and ancestries. Cell genomics. 2023;3(8):100345. doi:10.1016/j.xgen.2023.100345