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Publications

On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitis.

Key FM, Khadka VD, Romo-González C, et al. On-person adaptive evolution of Staphylococcus aureus during treatment for atopic dermatitis. Cell host & microbe. 2023;31(4):593-603.e7. doi:10.1016/j.chom.2023.03.009

Stratified Genetic Analysis Reveals Sex Differences In MPO-ANCA-associated Vasculitis.

Ekman D, Sennblad B, Knight A, et al. Stratified Genetic Analysis Reveals Sex Differences In MPO-ANCA-associated Vasculitis. Rheumatology (Oxford, England). 2023. doi:10.1093/rheumatology/kead152

Cue: a deep-learning framework for structural variant discovery and genotyping.

Popic V, Rohlicek C, Cunial F, et al. Cue: a deep-learning framework for structural variant discovery and genotyping. Nature methods. 2023;20(4):559-568. doi:10.1038/s41592-023-01799-x

Bi-allelic variants in INTS11 are associated with a complex neurological disorder.

Tepe B, Macke EL, Niceta M, et al. Bi-allelic variants in INTS11 are associated with a complex neurological disorder. American journal of human genetics. 2023;110(5):774-789. doi:10.1016/j.ajhg.2023.03.012

Adjusting for common variant polygenic scores improves yield in rare variant association analyses.

Jurgens SJ, Pirruccello JP, Choi SH, et al. Adjusting for common variant polygenic scores improves yield in rare variant association analyses. Nature genetics. 2023;55(4):544-548. doi:10.1038/s41588-023-01342-w

Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms.

Henao L, Zade RSH, Restrepo S, Husserl J, Abeel T. Genomes of four Streptomyces strains reveal insights into putative new species and pathogenicity of scab-causing organisms. BMC genomics. 2023;24(1):143. doi:10.1186/s12864-023-09190-y

Whole Genome Analysis of Venous Thromboembolism: the Trans-Omics for Precision Medicine Program.

Seyerle AA, Laurie CA, Coombes BJ, et al. Whole Genome Analysis of Venous Thromboembolism: the Trans-Omics for Precision Medicine Program. Circulation. Genomic and precision medicine. 2023;16(2):e003532. doi:10.1161/CIRCGEN.121.003532

Plasma lipidome and risk of atrial fibrillation: results from the PREDIMED trial.

Toledo E, Wittenbecher C, Razquin C, et al. Plasma lipidome and risk of atrial fibrillation: results from the PREDIMED trial. Journal of physiology and biochemistry. 2023. doi:10.1007/s13105-023-00958-0

Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients.

Tsai PC, Lee TH, Kuo KC, et al. Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients. Nature communications. 2023;14(1):2102. doi:10.1038/s41467-023-37179-4

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility.

Salvatore M, Horlacher M, Marsico A, Winther O, Andersson R. Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility. NAR genomics and bioinformatics. 2023;5(2):lqad026. doi:10.1093/nargab/lqad026