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Publications

Morphological and transcriptomic analyses of stem cell-derived cortical neurons reveal mechanisms underlying synaptic dysfunction in schizophrenia.

Kathuria A, Lopez-Lengowski K, Watmuff B, Karmacharya R. Morphological and transcriptomic analyses of stem cell-derived cortical neurons reveal mechanisms underlying synaptic dysfunction in schizophrenia. Genome medicine. 2023;15(1):58. doi:10.1186/s13073-023-01203-5

Lectin-Seq: A method to profile lectin-microbe interactions in native communities.

McPherson RL, Isabella CR, Walker RL, et al. Lectin-Seq: A method to profile lectin-microbe interactions in native communities. Science advances. 2023;9(30):eadd8766. doi:10.1126/sciadv.add8766

IGLV3-21R110 mutation has prognostic value in patients with treatment-naive chronic lymphocytic leukemia.

Nadeu F, Syrykh C, Pons-Brun B, et al. IGLV3-21R110 mutation has prognostic value in patients with treatment-naive chronic lymphocytic leukemia. Blood advances. 2023. doi:10.1182/bloodadvances.2023010132

Droplet Tn-Seq identifies the primary secretion mechanism for yersiniabactin in Yersinia pestis.

Price SL, Thibault D, Garrison TM, et al. Droplet Tn-Seq identifies the primary secretion mechanism for yersiniabactin in Yersinia pestis. EMBO reports. 2023:e57369. doi:10.15252/embr.202357369

Landscape of mSWI/SNF chromatin remodeling complex perturbations in neurodevelopmental disorders.

Valencia AM, Sankar A, van der Sluijs PJ, et al. Landscape of mSWI/SNF chromatin remodeling complex perturbations in neurodevelopmental disorders. Nature genetics. 2023. doi:10.1038/s41588-023-01451-6

Segmentation metric misinterpretations in bioimage analysis.

Hirling D, Tasnadi E, Caicedo J, et al. Segmentation metric misinterpretations in bioimage analysis. Nature methods. 2023. doi:10.1038/s41592-023-01942-8

Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro.

Dolan MJ, Therrien M, Jereb S, et al. Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro. Nature immunology. 2023. doi:10.1038/s41590-023-01558-2

Genetic modification of inflammation and clonal hematopoiesis-associated cardiovascular risk.

Yu Z, Filder TP, Ruan Y, et al. Genetic modification of inflammation and clonal hematopoiesis-associated cardiovascular risk. The Journal of clinical investigation. 2023. doi:10.1172/JCI168597

Genomic signatures of barley breeding for environmental adaptation to the new continents.

Hu H, Wang P, Angessa TT, et al. Genomic signatures of barley breeding for environmental adaptation to the new continents. Plant biotechnology journal. 2023. doi:10.1111/pbi.14077

Vitrification preserves follicular transcriptomic dynamics during ex vivo ovulation Vitrification preserves ovulatory transcriptome.

Zhang J, Russo DD, Wang Y, et al. Vitrification preserves follicular transcriptomic dynamics during ex vivo ovulation Vitrification preserves ovulatory transcriptome. Biology of reproduction. 2023. doi:10.1093/biolre/ioad083