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Gene Regulation Observatory
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Thakore PI, Schnell A, Huang L, et al. BACH2 regulates diversification of regulatory and proinflammatory chromatin states in T17 cells. Nature immunology. 2024. doi:10.1038/s41590-024-01901-1
Rajachandran S, Xu Q, Cao Q, et al. Subcellular Level Spatial Transcriptomics with PHOTON. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.09.10.612328
Najm FJ, DeWeirdt P, Moore MM, et al. Chromatin complex dependencies reveal targeting opportunities in leukemia. Nature communications. 2023;14(1):448. doi:10.1038/s41467-023-36150-7
De Rop F V, Hulselmans G, Flerin C, et al. Systematic benchmarking of single-cell ATAC-sequencing protocols. Nature biotechnology. 2023. doi:10.1038/s41587-023-01881-x
Martyn GE, Montgomery MT, Jones H, et al. Rewriting regulatory DNA to dissect and reprogram gene expression. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.12.20.572268
Mangiameli SM, Chen H, Earl AS, et al. Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods. 2023;20(5):686-694. doi:10.1038/s41592-023-01845-8
Chen Z, Javed N, Moore M, et al. Integrative dissection of gene regulatory elements at base resolution. Cell genomics. 2023;3(6):100318. doi:10.1016/j.xgen.2023.100318
Hecht V, Dong K, Rajesh S, Shpilker P, Wekhande S, Shoresh N. Analyzing histone ChIP-seq data with a bin-based probability of being signal. PLoS computational biology. 2023;19(10):e1011568. doi:10.1371/journal.pcbi.1011568