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Gene Regulation Observatory
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Mangiameli SM, Chen H, Earl AS, et al. Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution. Nature methods. 2023;20(5):686-694. doi:10.1038/s41592-023-01845-8
Simonson B, Chaffin M, Hill MC, et al. Single-nucleus RNA sequencing in ischemic cardiomyopathy reveals common transcriptional profile underlying end-stage heart failure. Cell reports. 2023;42(2):112086. doi:10.1016/j.celrep.2023.112086
Joung J, Ma S, Tay T, et al. A transcription factor atlas of directed differentiation. Cell. 2023;186(1):209-229.e26. doi:10.1016/j.cell.2022.11.026
Cheong JG, Ravishankar A, Sharma S, et al. Epigenetic memory of coronavirus infection in innate immune cells and their progenitors. Cell. 2023. doi:10.1016/j.cell.2023.07.019
Hu Y, Ma S, Kartha VK, et al. Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.03.28.533945
Hecht V, Dong K, Rajesh S, Shpilker P, Wekhande S, Shoresh N. Analyzing histone ChIP-seq data with a bin-based probability of being signal. PLoS computational biology. 2023;19(10):e1011568. doi:10.1371/journal.pcbi.1011568
Martyn GE, Montgomery MT, Jones H, et al. Rewriting regulatory DNA to dissect and reprogram gene expression. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.12.20.572268
Yin Q, Yang CH, Strelkova OS, et al. Revisiting chromatin packaging in mouse sperm. Genome research. 2023;33(12):2079-93. doi:10.1101/gr.277845.123