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Publications

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics.

Fontaine MC, Pease JB, Steele A, et al. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science. 2015;347(6217):1258524. doi:10.1126/science.1258524

From Mutational Mechanisms in Single Cells to Mutational Patterns in Cancer Genomes.

Zhang CZ, Pellman D. From Mutational Mechanisms in Single Cells to Mutational Patterns in Cancer Genomes. Cold Spring Harb Symp Quant Biol. 2015;80:117-37. doi:10.1101/sqb.2015.80.027623

Crowdsourcing the creation of image segmentation algorithms for connectomics.

Arganda-Carreras I, Turaga SC, Berger DR, et al. Crowdsourcing the creation of image segmentation algorithms for connectomics. Front Neuroanat. 2015;9:142. doi:10.3389/fnana.2015.00142

Constellation Map: Downstream visualization and interpretation of gene set enrichment results.

Tan Y, Wu F, Tamayo P, Haining N, Mesirov JP. Constellation Map: Downstream visualization and interpretation of gene set enrichment results. F1000Res. 2015;4:167. doi:10.12688/f1000research.6644.1

50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens.

Schwartz IS, Kenyon C, Feng P, et al. 50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens. PLoS Pathog. 2015;11(11):e1005198. doi:10.1371/journal.ppat.1005198

Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction.

Klarenbeek PL, Doorenspleet ME, Esveldt REE, et al. Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction. PLoS One. 2015;10(10):e0140815. doi:10.1371/journal.pone.0140815

Genetic Variants on Chromosome 1p13.3 Are Associated with Non-ST Elevation Myocardial Infarction and the Expression of DRAM2 in the Finnish Population.

Salo PP, Vaara S, Kettunen J, et al. Genetic Variants on Chromosome 1p13.3 Are Associated with Non-ST Elevation Myocardial Infarction and the Expression of DRAM2 in the Finnish Population. PLoS One. 2015;10(10):e0140576. doi:10.1371/journal.pone.0140576

A perspective on stem cell modeling of amyotrophic lateral sclerosis.

de Boer S, Eggan K. A perspective on stem cell modeling of amyotrophic lateral sclerosis. Cell Cycle. 2015;14(23):3679-88. doi:10.1080/15384101.2015.1093712

Antibody-based capture of target peptides in multiple reaction monitoring experiments.

De Marchi T, Kuhn E, Carr SA, Umar A. Antibody-based capture of target peptides in multiple reaction monitoring experiments. Methods Mol Biol. 2015;1293:123-35. doi:10.1007/978-1-4939-2519-3_7

Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation.

Croteau-Chonka DC, Rogers AJ, Raj T, et al. Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation. PLoS One. 2015;10(10):e0140758. doi:10.1371/journal.pone.0140758