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Publications

Novel Genetic Risk Variants Associated with Oral Tongue Squamous Cell Carcinoma.

Nikkilä R, Mäkitie A, Joensuu H, et al. Novel Genetic Risk Variants Associated with Oral Tongue Squamous Cell Carcinoma. Head and neck pathology. 2025;19(1):45. doi:10.1007/s12105-025-01784-0

DNMT3A Stability Is Maintained by Ubiquitin-Specific Peptidase 11 (USP11) and Sumoylation Countering Degradation.

Yonezawa T, Rutter JC, Ramabadran R, et al. DNMT3A Stability Is Maintained by Ubiquitin-Specific Peptidase 11 (USP11) and Sumoylation Countering Degradation. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.05.641683

Massively parallel reporter assays identify functional enhancer variants at QT interval GWAS loci.

Lee D, Gunamalai L, Kannan J, et al. Massively parallel reporter assays identify functional enhancer variants at QT interval GWAS loci. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.11.642686

Population genomics of , the principal South American malaria vector mosquito.

Tennessen JA, Brosula R, Chabanol E, et al. Population genomics of , the principal South American malaria vector mosquito. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.13.643102

Neotenic expansion of adult-born dentate granule cells reconfigures GABAergic inhibition to enhance social memory consolidation.

Chung A, Alipio JB, Ghosh M, et al. Neotenic expansion of adult-born dentate granule cells reconfigures GABAergic inhibition to enhance social memory consolidation. Research square. 2025. doi:10.21203/rs.3.rs-6087158/v1

Spatial patterning of fibroblast TGFβ signaling underlies treatment resistance in rheumatoid arthritis.

Bhamidipati K, McIntyre ABR, Kazerounian S, et al. Spatial patterning of fibroblast TGFβ signaling underlies treatment resistance in rheumatoid arthritis. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.14.642821

Accurate trajectory inference in time-series spatial transcriptomics with structurally-constrained optimal transport.

Bryan JP, Farhi SL, Cleary B. Accurate trajectory inference in time-series spatial transcriptomics with structurally-constrained optimal transport. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.19.644194

Spatial Transcriptomics Identifies Immune-Stromal Niches Associated with Cancer in Adult Dermatomyositis.

Anufrieva KS, Shahriari N, Gao C, et al. Spatial Transcriptomics Identifies Immune-Stromal Niches Associated with Cancer in Adult Dermatomyositis. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.19.644147

Neotenic expansion of adult-born dentate granule cells reconfigures GABAergic inhibition to enhance social memory consolidation.

Chung A, Alipio JB, Ghosh M, et al. Neotenic expansion of adult-born dentate granule cells reconfigures GABAergic inhibition to enhance social memory consolidation. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.17.643806

JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale.

Specht I, Moreno GK, Brock-Fisher T, et al. JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at Scale. Research square. 2025. doi:10.21203/rs.3.rs-6264999/v1