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Publications

affinity maturation of the HIV-1 Env-binding domain of CD4.

Pan A, Bailey CC, Ou T, et al. affinity maturation of the HIV-1 Env-binding domain of CD4. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.03.578630

Considerations for reporting variants in novel candidate genes identified during clinical genomic testing.

Chong JX, Berger SI, Baxter S, et al. Considerations for reporting variants in novel candidate genes identified during clinical genomic testing. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.05.579012

An evolutionary learning-based method for identifying a circulating miRNA signature for breast cancer diagnosis prediction.

Sathipati SY, Tsai MJ, Aimalla N, et al. An evolutionary learning-based method for identifying a circulating miRNA signature for breast cancer diagnosis prediction. NAR genomics and bioinformatics. 2024;6(1):lqae022. doi:10.1093/nargab/lqae022

An evolutionary learning-based method for identifying a circulating miRNA signature for breast cancer diagnosis prediction.

Sathipati SY, Tsai MJ, Aimalla N, et al. An evolutionary learning-based method for identifying a circulating miRNA signature for breast cancer diagnosis prediction. NAR genomics and bioinformatics. 2024;6(1):lqae022. doi:10.1093/nargab/lqae022

Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer.

Tong X, Patel AS, Kim E, et al. Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer. Cancer cell. 2024. doi:10.1016/j.ccell.2024.01.012

Phage-assisted evolution of highly active cytosine base editors with enhanced selectivity and minimal sequence context preference.

Zhang E, Neugebauer ME, Krasnow NA, Liu DR. Phage-assisted evolution of highly active cytosine base editors with enhanced selectivity and minimal sequence context preference. Nature communications. 2024;15(1):1697. doi:10.1038/s41467-024-45969-7

Associations of brain morphology with cortical proteins of cognitive resilience.

Poole VN, Ridwan AR, Arfanakis K, et al. Associations of brain morphology with cortical proteins of cognitive resilience. Neurobiology of aging. 2024;137:1-7. doi:10.1016/j.neurobiolaging.2024.02.005

Polygenic burden and its association with baseline cognitive function and postoperative cognitive outcome in temporal lobe epilepsy.

Arrotta K, Ferguson L, Thompson N, et al. Polygenic burden and its association with baseline cognitive function and postoperative cognitive outcome in temporal lobe epilepsy. Epilepsy & behavior : E&B. 2024;153:109692. doi:10.1016/j.yebeh.2024.109692

Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples.

Coorens THH, Chapman MS, Williams N, et al. Reconstructing phylogenetic trees from genome-wide somatic mutations in clonal samples. Nature protocols. 2024. doi:10.1038/s41596-024-00962-8

Author Correction: Systematic profiling of conditional pathway activation identifies context-dependent synthetic lethalities.

Chang L, Jung NY, Atari A, et al. Author Correction: Systematic profiling of conditional pathway activation identifies context-dependent synthetic lethalities. Nature genetics. 2024. doi:10.1038/s41588-024-01680-3