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Publications

Divergent opioid-mediated suppression of inhibition between hippocampus and neocortex across species and development.

Caccavano AP, Kimmel S, Vlachos A, et al. Divergent opioid-mediated suppression of inhibition between hippocampus and neocortex across species and development. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.20.576455

Refinement of a published gene-physical activity interaction impacting HDL-cholesterol: role of sex and lipoprotein subfractions.

Westerman KE, Kilpeläinen TO, Sevilla-Gonzalez M, et al. Refinement of a published gene-physical activity interaction impacting HDL-cholesterol: role of sex and lipoprotein subfractions. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.01.23.24301689

Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications.

Ctortecka C, Clark NM, Boyle B, et al. Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.20.576369

DeepRegFinder: deep learning-based regulatory elements finder.

Ramakrishnan A, Wangensteen G, Kim S, Nestler EJ, Shen L. DeepRegFinder: deep learning-based regulatory elements finder. Bioinformatics advances. 2024;4(1):vbae007. doi:10.1093/bioadv/vbae007

Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis.

Meng Q, Zhao Y, Xu M, et al. Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis. Frontiers in immunology. 2024;15:1287632. doi:10.3389/fimmu.2024.1287632

RAS/RAF co-mutation and ERBB2 copy number modulates HER2 heterogeneity and responsiveness to HER2-directed therapy in colorectal cancer.

Singh H, Sahgal P, Kapner K, et al. RAS/RAF co-mutation and ERBB2 copy number modulates HER2 heterogeneity and responsiveness to HER2-directed therapy in colorectal cancer. Clinical cancer research : an official journal of the American Association for Cancer Research. 2024. doi:10.1158/1078-0432.CCR-23-2581

The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes.

Mallick S, Micco A, Mah M, et al. The Allen Ancient DNA Resource (AADR) a curated compendium of ancient human genomes. Scientific data. 2024;11(1):182. doi:10.1038/s41597-024-03031-7

Genetic contribution to the comorbidity between attention-deficit/hyperactivity disorder and substance use disorders.

Koller D, Mitjans M, Kouakou M, et al. Genetic contribution to the comorbidity between attention-deficit/hyperactivity disorder and substance use disorders. Psychiatry research. 2024;333:115758. doi:10.1016/j.psychres.2024.115758

Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome.

Akshay A, Besic M, Kuhn A, et al. Machine Learning-Based Classification of Transcriptome Signatures of Non-Ulcerative Bladder Pain Syndrome. International journal of molecular sciences. 2024;25(3). doi:10.3390/ijms25031568

Protocol for neurogenin-2-mediated induction of human stem cell-derived neural progenitor cells.

Guss EJ, Sathe L, Dai A, et al. Protocol for neurogenin-2-mediated induction of human stem cell-derived neural progenitor cells. STAR protocols. 2024;5(1):102878. doi:10.1016/j.xpro.2024.102878