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Publications

Simplifying SARS-CoV-2 wastewater-based surveillance using an automated FDA EUA assay.

Sathyanarayana SH, Robins AA, Toledo DM, et al. Simplifying SARS-CoV-2 wastewater-based surveillance using an automated FDA EUA assay. Microbiology spectrum. 2025:e0249024. doi:10.1128/spectrum.02490-24

Characteristics of objectively-measured naturalistic light exposure patterns in U.S. adults: A cross-sectional analysis of two cohorts.

Wallace DA, Evenson KR, Isasi CR, et al. Characteristics of objectively-measured naturalistic light exposure patterns in U.S. adults: A cross-sectional analysis of two cohorts. The Science of the total environment. 2025;969:178839. doi:10.1016/j.scitotenv.2025.178839

Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1.

Oliver TRW, Lawson ARJ, Lee-Six H, et al. Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1. Nature genetics. 2025. doi:10.1038/s41588-025-02097-2

Detecting somatic mutations in single-cell data with SComatic.

Coorens THH. Detecting somatic mutations in single-cell data with SComatic. Nature reviews. Cancer. 2025. doi:10.1038/s41568-025-00799-7

Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns.

Millard N, Chen JH, Palshikar MG, et al. Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns. Genome biology. 2025;26(1):36. doi:10.1186/s13059-025-03479-9

Genome-Wide Association Study for Resting Electrocardiogram in the Qatari Population Identifies 6 Novel Genes and Validates Novel Polygenic Risk Scores.

Khan N, Shaar A, Kunji K, et al. Genome-Wide Association Study for Resting Electrocardiogram in the Qatari Population Identifies 6 Novel Genes and Validates Novel Polygenic Risk Scores. Journal of the American Heart Association. 2025:e038341. doi:10.1161/JAHA.124.038341

Chemical Synthesis, Refolding, and Characterization of Mirror-Image Cyclophilin A.

Yesilcimen A, Gandhesiri S, Travaline TL, et al. Chemical Synthesis, Refolding, and Characterization of Mirror-Image Cyclophilin A. The Journal of organic chemistry. 2025. doi:10.1021/acs.joc.4c03049

Analysis-ready VCF at Biobank scale using Zarr.

Czech E, Millar TR, Tyler W, et al. Analysis-ready VCF at Biobank scale using Zarr. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2024.06.11.598241

ClinGen recuration of hearing loss associated-genes demonstrates significant changes in gene-disease validity over time.

Tshering KC, DiStefano MT, Oza AM, et al. ClinGen recuration of hearing loss associated-genes demonstrates significant changes in gene-disease validity over time. Genetics in medicine : official journal of the American College of Medical Genetics. 2025:101392. doi:10.1016/j.gim.2025.101392

Label-Free Detection of Biochemical Changes during Cortical Organoid Maturation via Raman Spectroscopy and Machine Learning.

Bruno G, Lipinski M, Kobayashi-Kirschvink KJ, et al. Label-Free Detection of Biochemical Changes during Cortical Organoid Maturation via Raman Spectroscopy and Machine Learning. Analytical chemistry. 2025. doi:10.1021/acs.analchem.4c05661