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Publications

Principles of Computation by Competitive Protein Dimerization Networks.

Parres-Gold J, Levine M, Emert B, Stuart A, Elowitz MB. Principles of Computation by Competitive Protein Dimerization Networks. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.30.564854

A general and efficient representation of ancestral recombination graphs.

Wong Y, Ignatieva A, Koskela J, Gorjanc G, Wohns AW, Kelleher J. A general and efficient representation of ancestral recombination graphs. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.03.565466

Fine-mapping causal tissues and genes at disease-associated loci.

Strober BJ, Zhang MJ, Amariuta T, Rossen J, Price AL. Fine-mapping causal tissues and genes at disease-associated loci. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.11.01.23297909

A statistical framework for powerful multi-trait rare variant analysis in large-scale whole-genome sequencing studies.

Li X, Chen H, Selvaraj MS, et al. A statistical framework for powerful multi-trait rare variant analysis in large-scale whole-genome sequencing studies. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.30.564764

Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics.

Thurimella K, Mohamed AMT, Graham DB, et al. Protein Language Models Uncover Carbohydrate-Active Enzyme Function in Metagenomics. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.23.563620

High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion dynamics.

Sept CE, Tak E, Cerda-Smith CG, et al. High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion dynamics. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.20.563340

Allostatic load in early adolescence: gene / environment contributions and relevance for mental health.

Hoffman KW, Tran KT, Moore TM, et al. Allostatic load in early adolescence: gene / environment contributions and relevance for mental health. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.10.27.23297674

affinity maturation of murine B cells reprogrammed to express human antibodies.

Yin Y, Guo Y, Jiang Y, et al. affinity maturation of murine B cells reprogrammed to express human antibodies. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.20.563154

Modular vector assembly enables rapid assessment of emerging CRISPR technologies.

McGee A V, Liu Y V, Griffith AL, et al. Modular vector assembly enables rapid assessment of emerging CRISPR technologies. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.25.564061

Programs, Origins, and Niches of Immunomodulatory Myeloid Cells in Gliomas.

Miller TE, Farran CAE, Couturier CP, et al. Programs, Origins, and Niches of Immunomodulatory Myeloid Cells in Gliomas. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.24.563466