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Publications

A multidimensional analysis reveals distinct immune phenotypes and tertiary lymphoid structure-like aggregates in the bone marrow of pediatric acute myeloid leukemia.

Koedijk JB, van der Werf I, Penter L, et al. A multidimensional analysis reveals distinct immune phenotypes and tertiary lymphoid structure-like aggregates in the bone marrow of pediatric acute myeloid leukemia. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.03.03.23286485

Engineering microvascular networks using a KLF2 reporter to probe flow-dependent endothelial cell function.

Blazeski A, Floryan MA, Fajardo-Ramírez OR, et al. Engineering microvascular networks using a KLF2 reporter to probe flow-dependent endothelial cell function. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.31.565021

Dynamic Importance of Genomic and Clinical Risk for Coronary Artery Disease Over the Life Course.

Urbut SM, Cho SMJ, Paruchuri K, et al. Dynamic Importance of Genomic and Clinical Risk for Coronary Artery Disease Over the Life Course. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.11.03.23298055

Evaluating the impact of modeling choices on the performance of integrated genetic and clinical models.

Morley TJ, Willimitis D, Ripperger M, et al. Evaluating the impact of modeling choices on the performance of integrated genetic and clinical models. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.11.01.23297927

Integrating single-cell RNA-seq datasets with substantial batch effects.

Hrovatin K, Moinfar AA, Lapuerta AT, et al. Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.03.565463

scX: A user-friendly tool for scRNA-seq exploration.

Waichman TV, Vercesi L, Berardino AA, et al. scX: A user-friendly tool for scRNA-seq exploration. ArXiv. 2023.

Single-cell transcriptomics stratifies organoid models of metabolic dysfunction-associated steatotic liver disease.

Hess A, Gentile SD, Ben Saad A, et al. Single-cell transcriptomics stratifies organoid models of metabolic dysfunction-associated steatotic liver disease. The EMBO journal. 2023;42(24):e113898. doi:10.15252/embj.2023113898

The molecular genetic landscape of human brain size variation.

Seidlitz J, Mallard TT, Vogel JW, et al. The molecular genetic landscape of human brain size variation. Cell reports. 2023;42(11):113439. doi:10.1016/j.celrep.2023.113439

Cross-ancestry analyses identify new genetic loci associated with 25-hydroxyvitamin D.

Wang X, Hivert V, Groot S, et al. Cross-ancestry analyses identify new genetic loci associated with 25-hydroxyvitamin D. PLoS genetics. 2023;19(11):e1011033. doi:10.1371/journal.pgen.1011033

Bi-allelic loss-of-function variants in WBP4, encoding a spliceosome protein, result in a variable neurodevelopmental syndrome.

Engal E, Oja KT, Maroofian R, et al. Bi-allelic loss-of-function variants in WBP4, encoding a spliceosome protein, result in a variable neurodevelopmental syndrome. American journal of human genetics. 2023;110(12):2112-2119. doi:10.1016/j.ajhg.2023.10.013