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Publications

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution.

Kang JB, Shen AZ, Gurajala S, et al. Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution. Nature genetics. 2023;55(12):2255-2268. doi:10.1038/s41588-023-01586-6

Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes.

Hernández G, García A, Weingarten-Gabbay S, et al. Functional analysis of the AUG initiator codon context reveals novel conserved sequences that disfavor mRNA translation in eukaryotes. Nucleic acids research. 2023. doi:10.1093/nar/gkad1152

Single-Cell Transcriptomes, Lineage, and Differentiation of Functional Airway Microfold Cells.

Surve M V, Lin B, Reedy JL, et al. Single-Cell Transcriptomes, Lineage, and Differentiation of Functional Airway Microfold Cells. American journal of respiratory cell and molecular biology. 2023;69(6):698-701. doi:10.1165/rcmb.2023-0292LE

Re-analysis and meta-analysis of summary statistics from gene-environment interaction studies.

Pham DT, Westerman KE, Pan C, et al. Re-analysis and meta-analysis of summary statistics from gene-environment interaction studies. Bioinformatics (Oxford, England). 2023;39(12). doi:10.1093/bioinformatics/btad730

Haplotype-based inference of recent effective population size in modern and ancient DNA samples.

Fournier R, Tsangalidou Z, Reich D, Palamara PF. Haplotype-based inference of recent effective population size in modern and ancient DNA samples. Nature communications. 2023;14(1):7945. doi:10.1038/s41467-023-43522-6

Determinants of the level of circulating-tumor HPV16 DNA in patients with HPV-associated oropharyngeal cancer at the time of diagnosis.

Kentnowski M, Cortez AJ, Mazurek AM, et al. Determinants of the level of circulating-tumor HPV16 DNA in patients with HPV-associated oropharyngeal cancer at the time of diagnosis. Scientific reports. 2023;13(1):21226. doi:10.1038/s41598-023-48506-6

Selenoprotein deficiency disorder predisposes to aortic aneurysm formation.

Schoenmakers E, Marelli F, Jørgensen HF, et al. Selenoprotein deficiency disorder predisposes to aortic aneurysm formation. Nature communications. 2023;14(1):7994. doi:10.1038/s41467-023-43851-6

Glycemic and sleep effects of daytime compared with those of overnight infusions of home parenteral nutrition in adults with short bowel syndrome: A quasi-experimental pilot trial.

Dashti HS, Leong A, Mogensen KM, et al. Glycemic and sleep effects of daytime compared with those of overnight infusions of home parenteral nutrition in adults with short bowel syndrome: A quasi-experimental pilot trial. The American journal of clinical nutrition. 2023. doi:10.1016/j.ajcnut.2023.11.016

kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq.

Sullivan DK, Min KHJ, Hjörleifsson KE, et al. kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.21.568164

A chromosomal reference genome sequence for the malaria mosquito, , Evans, 1925.

Nsango SN, Agbor JP, Ayala D, et al. A chromosomal reference genome sequence for the malaria mosquito, , Evans, 1925. Wellcome open research. 2023;8:507. doi:10.12688/wellcomeopenres.20259.1