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Publications

High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion dynamics.

Sept CE, Tak E, Cerda-Smith CG, et al. High-resolution CTCF footprinting reveals impact of chromatin state on cohesin extrusion dynamics. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.20.563340

Allostatic load in early adolescence: gene / environment contributions and relevance for mental health.

Hoffman KW, Tran KT, Moore TM, et al. Allostatic load in early adolescence: gene / environment contributions and relevance for mental health. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.10.27.23297674

affinity maturation of murine B cells reprogrammed to express human antibodies.

Yin Y, Guo Y, Jiang Y, et al. affinity maturation of murine B cells reprogrammed to express human antibodies. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.20.563154

Modular vector assembly enables rapid assessment of emerging CRISPR technologies.

McGee A V, Liu Y V, Griffith AL, et al. Modular vector assembly enables rapid assessment of emerging CRISPR technologies. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.25.564061

Programs, Origins, and Niches of Immunomodulatory Myeloid Cells in Gliomas.

Miller TE, Farran CAE, Couturier CP, et al. Programs, Origins, and Niches of Immunomodulatory Myeloid Cells in Gliomas. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.24.563466

A multidimensional analysis reveals distinct immune phenotypes and tertiary lymphoid structure-like aggregates in the bone marrow of pediatric acute myeloid leukemia.

Koedijk JB, van der Werf I, Penter L, et al. A multidimensional analysis reveals distinct immune phenotypes and tertiary lymphoid structure-like aggregates in the bone marrow of pediatric acute myeloid leukemia. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.03.03.23286485

Engineering microvascular networks using a KLF2 reporter to probe flow-dependent endothelial cell function.

Blazeski A, Floryan MA, Fajardo-Ramírez OR, et al. Engineering microvascular networks using a KLF2 reporter to probe flow-dependent endothelial cell function. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.10.31.565021

Dynamic Importance of Genomic and Clinical Risk for Coronary Artery Disease Over the Life Course.

Urbut SM, Cho SMJ, Paruchuri K, et al. Dynamic Importance of Genomic and Clinical Risk for Coronary Artery Disease Over the Life Course. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.11.03.23298055

Evaluating the impact of modeling choices on the performance of integrated genetic and clinical models.

Morley TJ, Willimitis D, Ripperger M, et al. Evaluating the impact of modeling choices on the performance of integrated genetic and clinical models. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.11.01.23297927

Integrating single-cell RNA-seq datasets with substantial batch effects.

Hrovatin K, Moinfar AA, Lapuerta AT, et al. Integrating single-cell RNA-seq datasets with substantial batch effects. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.11.03.565463