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Publications

Genomics of -Positive Breast Cancer in Young Women Before and After Exposure to Chemotherapy Plus Trastuzumab.

Lipsyc-Sharf M, Jain E, Collins LC, et al. Genomics of -Positive Breast Cancer in Young Women Before and After Exposure to Chemotherapy Plus Trastuzumab. JCO precision oncology. 2023;7:e2300076. doi:10.1200/PO.23.00076

Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on splicing: Recommendations from the ClinGen SVI Splicing Subgroup.

Walker LC, de la Hoya M, Wiggins GAR, et al. Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on splicing: Recommendations from the ClinGen SVI Splicing Subgroup. American journal of human genetics. 2023. doi:10.1016/j.ajhg.2023.06.002

Type 2 Diabetes Polygenic Score Predicts the Risk of Glucocorticoid-Induced Hyperglycemia in Patients Without Diabetes.

Deutsch AJ, Schroeder PH, Mandla R, et al. Type 2 Diabetes Polygenic Score Predicts the Risk of Glucocorticoid-Induced Hyperglycemia in Patients Without Diabetes. Diabetes care. 2023. doi:10.2337/dc23-0353

Publisher Correction: A pesticide and iPSC dopaminergic neuron screen identifies and classifies Parkinson-relevant pesticides.

Paul KC, Krolewski RC, Moreno EL, et al. Publisher Correction: A pesticide and iPSC dopaminergic neuron screen identifies and classifies Parkinson-relevant pesticides. Nature communications. 2023;14(1):3747. doi:10.1038/s41467-023-39001-7

Genetic, sociodemographic, lifestyle, and clinical risk factors of recurrent coronary artery disease events: a population-based cohort study.

Cho SMJ, Koyama S, Honigberg MC, et al. Genetic, sociodemographic, lifestyle, and clinical risk factors of recurrent coronary artery disease events: a population-based cohort study. European heart journal. 2023. doi:10.1093/eurheartj/ehad380

Optimization-based decoding of Imaging Spatial Transcriptomics data.

Bryan JP, Binan L, McCann C, Eldar YC, Farhi SL, Cleary B. Optimization-based decoding of Imaging Spatial Transcriptomics data. Bioinformatics (Oxford, England). 2023;39(6). doi:10.1093/bioinformatics/btad362

Shining a Light on the Dark Proteome: Non-Canonical Open Reading Frames and their Encoded MiniProteins as a New Frontier in Cancer Biology.

Posner Z, Yannuzzi I, Prensner JR. Shining a Light on the Dark Proteome: Non-Canonical Open Reading Frames and their Encoded MiniProteins as a New Frontier in Cancer Biology. Protein science : a publication of the Protein Society. 2023:e4708. doi:10.1002/pro.4708

Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics.

Morse DB, Michalowski AM, Ceribelli M, et al. Positional influence on cellular transcriptional identity revealed through spatially segmented single-cell transcriptomics. Cell systems. 2023;14(6):464-481.e7. doi:10.1016/j.cels.2023.05.003

BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences.

Valeri JA, Soenksen LR, Collins KM, et al. BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences. Cell systems. 2023;14(6):525-542.e9. doi:10.1016/j.cels.2023.05.007

Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution.

Fame RM, Kalugin PN, Petrova B, et al. Defining diurnal fluctuations in mouse choroid plexus and CSF at high molecular, spatial, and temporal resolution. Nature communications. 2023;14(1):3720. doi:10.1038/s41467-023-39326-3