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Publications

Riboformer: a deep learning framework for predicting context-dependent translation dynamics.

Shao B, Yan J, Zhang J, Liu L, Chen Y, Buskirk AR. Riboformer: a deep learning framework for predicting context-dependent translation dynamics. Nature communications. 2024;15(1):2011. doi:10.1038/s41467-024-46241-8

Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments.

Janiszewska M, Tabassum DP, Castaño Z, et al. Author Correction: Subclonal cooperation drives metastasis by modulating local and systemic immune microenvironments. Nature cell biology. 2024. doi:10.1038/s41556-024-01385-z

Multi-ancestry polygenic mechanisms of type 2 diabetes.

Smith K, Deutsch AJ, McGrail C, et al. Multi-ancestry polygenic mechanisms of type 2 diabetes. Nature medicine. 2024. doi:10.1038/s41591-024-02865-3

Evaluating the performance of Plasmodium falciparum genetic metrics for inferring National Malaria Control Programme reported incidence in Senegal.

Wong W, Schaffner SF, Thwing J, et al. Evaluating the performance of Plasmodium falciparum genetic metrics for inferring National Malaria Control Programme reported incidence in Senegal. Malaria journal. 2024;23(1):68. doi:10.1186/s12936-024-04897-z

RNA cis-regulators are important for Streptococcus pneumoniae in vivo success.

Warrier I, Perry A, Hubbell SM, Eichelman M, van Opijnen T, Meyer MM. RNA cis-regulators are important for Streptococcus pneumoniae in vivo success. PLoS genetics. 2024;20(3):e1011188. doi:10.1371/journal.pgen.1011188

DNA methylation signatures of early-life adversity are exposure-dependent in wild baboons.

Anderson JA, Lin D, Lea AJ, et al. DNA methylation signatures of early-life adversity are exposure-dependent in wild baboons. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(11):e2309469121. doi:10.1073/pnas.2309469121

Round Table Discussion on Optimal Clinical Trial Design in Precursor Multiple Myeloma.

Ghobrial IM, Gormley N, Kumar SK, et al. Round Table Discussion on Optimal Clinical Trial Design in Precursor Multiple Myeloma. Blood cancer discovery. 2024:OF1-OF7. doi:10.1158/2643-3230.BCD-24-0022

An extra X chromosome among adult women in the Million Veteran Program: A more benign perspective of trisomy X.

Davis SM, Teerlink CC, Lynch JA, et al. An extra X chromosome among adult women in the Million Veteran Program: A more benign perspective of trisomy X. American journal of medical genetics. Part C, Seminars in medical genetics. 2024:e32083. doi:10.1002/ajmg.c.32083

A spatially-resolved transcriptional atlas of the murine dorsal pons at single-cell resolution.

Nardone S, De Luca R, Zito A, et al. A spatially-resolved transcriptional atlas of the murine dorsal pons at single-cell resolution. Nature communications. 2024;15(1):1966. doi:10.1038/s41467-024-45907-7

QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration.

Advani J, Mehta PA, Hamel AR, et al. QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration. Nature communications. 2024;15(1):1972. doi:10.1038/s41467-024-46063-8