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Publications

PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets.

Zhang Z, Shen W, Liu Q, Zitnik M. PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.25.581968

Continuous-Time and Dynamic Suicide Attempt Risk Prediction with Neural Ordinary Differential Equations.

Sheu YH, Simm J, Wang B, Lee H, Smoller JW. Continuous-Time and Dynamic Suicide Attempt Risk Prediction with Neural Ordinary Differential Equations. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.02.25.24303343

Evaluating generalizability of artificial intelligence models for molecular datasets.

Ektefaie Y, Shen A, Bykova D, Marin M, Zitnik M, Farhat M. Evaluating generalizability of artificial intelligence models for molecular datasets. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.25.581982

Comprehensive association analyses of extraintestinal manifestations in inflammatory bowel disease.

Khrom M, Long M, Dube S, et al. Comprehensive association analyses of extraintestinal manifestations in inflammatory bowel disease. Gastroenterology. 2024. doi:10.1053/j.gastro.2024.02.026

Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy.

Maurer K, Park CY, Mani S, et al. Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.09.579677

Validation of an ICD-code-based case definition for psychotic illness across three health systems.

Deo AJ, Castro VM, Baker A, et al. Validation of an ICD-code-based case definition for psychotic illness across three health systems. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.02.28.24303443

Graph Fourier transform for spatial omics representation and analyses of complex organs.

Chang Y, Liu J, Jiang Y, et al. Graph Fourier transform for spatial omics representation and analyses of complex organs. Research square. 2024. doi:10.21203/rs.3.rs-3952048/v1

Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation.

Kim KL, Rahme GJ, Goel VY, Farran CAE, Hansen AS, Bernstein BE. Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation. Molecular cell. 2024. doi:10.1016/j.molcel.2024.02.007

Blood-based DNA methylation and exposure risk scores predict PTSD with high accuracy in military and civilian cohorts.

Wani A, Katrinli S, Zhao X, et al. Blood-based DNA methylation and exposure risk scores predict PTSD with high accuracy in military and civilian cohorts. Research square. 2024. doi:10.21203/rs.3.rs-3952163/v1

Detecting missed diagnoses of spinal muscular atrophy in genome, exome, and panel sequencing datasets.

Weisburd B, Sharma R, Pata V, et al. Detecting missed diagnoses of spinal muscular atrophy in genome, exome, and panel sequencing datasets. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.02.11.24302646