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Publications

Comparison between inverse-probability weighting and multiple imputation in Cox model with missing failure subtype.

Guo F, Langworthy B, Ogino S, Wang M. Comparison between inverse-probability weighting and multiple imputation in Cox model with missing failure subtype. Statistical methods in medical research. 2024:9622802231226328. doi:10.1177/09622802231226328

Mass spectrometry-based proteomics data from thousands of HeLa control samples.

Webel H, Perez-Riverol Y, Nielsen AB, Rasmussen S. Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data. 2024;11(1):112. doi:10.1038/s41597-024-02922-z

Author Correction: GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data.

Babadi M, Fu JM, Lee SK, et al. Author Correction: GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data. Nature genetics. 2024. doi:10.1038/s41588-024-01663-4

Author Correction: GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data.

Babadi M, Fu JM, Lee SK, et al. Author Correction: GATK-gCNV enables the discovery of rare copy number variants from exome sequencing data. Nature genetics. 2024. doi:10.1038/s41588-024-01663-4

XRN1 deletion induces PKR-dependent cell lethality in interferon-activated cancer cells.

Zou T, Zhou M, Gupta A, et al. XRN1 deletion induces PKR-dependent cell lethality in interferon-activated cancer cells. Cell reports. 2024;43(2):113600. doi:10.1016/j.celrep.2023.113600

BCFtools/liftover: an accurate and comprehensive tool to convert genetic variants across genome assemblies.

Genovese G, Rockweiler NB, Gorman BR, et al. BCFtools/liftover: an accurate and comprehensive tool to convert genetic variants across genome assemblies. Bioinformatics (Oxford, England). 2024. doi:10.1093/bioinformatics/btae038

Using Generative Modeling to Endow with Potency Initially Inert Compounds with Good Bioavailability and Low Toxicity.

Horne RI, Wilson-Godber J, Díaz AG, et al. Using Generative Modeling to Endow with Potency Initially Inert Compounds with Good Bioavailability and Low Toxicity. Journal of chemical information and modeling. 2024. doi:10.1021/acs.jcim.3c01777

Antigen presenting cells in cancer immunity and mediation of immune checkpoint blockade.

Wang C, Chen L, Fu D, et al. Antigen presenting cells in cancer immunity and mediation of immune checkpoint blockade. Clinical & experimental metastasis. 2024. doi:10.1007/s10585-023-10257-z

Narrowing the Diagnostic Gap: Genomes, Episignatures, Long-Read Sequencing and Health Economic Analyses in an Exome-Negative Intellectual Disability Cohort.

Dias KR, Shrestha R, Schofield D, et al. Narrowing the Diagnostic Gap: Genomes, Episignatures, Long-Read Sequencing and Health Economic Analyses in an Exome-Negative Intellectual Disability Cohort. Genetics in medicine : official journal of the American College of Medical Genetics. 2024:101076. doi:10.1016/j.gim.2024.101076

Deciphering cell states and genealogies of human hematopoiesis.

Weng C, Yu F, Yang D, et al. Deciphering cell states and genealogies of human hematopoiesis. Nature. 2024. doi:10.1038/s41586-024-07066-z