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Publications

SIMBA: single-cell embedding along with features.

Chen H, Ryu J, Vinyard ME, Lerer A, Pinello L. SIMBA: single-cell embedding along with features. Nature methods. 2023. doi:10.1038/s41592-023-01899-8

Understanding inequities in precision oncology diagnostics.

Dutta R, Vallurupalli M, McVeigh Q, Huang FW, Rebbeck TR. Understanding inequities in precision oncology diagnostics. Nature cancer. 2023. doi:10.1038/s43018-023-00568-1

Genome-wide association meta-analysis of spontaneous coronary artery dissection identifies risk variants and genes related to artery integrity and tissue-mediated coagulation.

Adlam D, Berrandou TE, Georges A, et al. Genome-wide association meta-analysis of spontaneous coronary artery dissection identifies risk variants and genes related to artery integrity and tissue-mediated coagulation. Nature genetics. 2023. doi:10.1038/s41588-023-01410-1

A genome-wide association study of antidepressant-induced mania.

Zai CC, Squassina A, Tiwari AK, et al. A genome-wide association study of antidepressant-induced mania. Progress in neuro-psychopharmacology & biological psychiatry. 2023:110800. doi:10.1016/j.pnpbp.2023.110800

A single-cell map of antisense oligonucleotide activity in the brain.

Mortberg MA, Gentile JE, Nadaf N, et al. A single-cell map of antisense oligonucleotide activity in the brain. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.02.14.528473

spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape.

Boniolo F, Hoffmann M, Roggendorf N, et al. spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape. Bioinformatics (Oxford, England). 2023;39(5). doi:10.1093/bioinformatics/btad276

Editorial: Artificial intelligence for data discovery and reuse in endocrinology and metabolism.

Angione C, Wang H, Burtt N. Editorial: Artificial intelligence for data discovery and reuse in endocrinology and metabolism. Frontiers in endocrinology. 2023;14:1180254. doi:10.3389/fendo.2023.1180254

Corrigendum: Genetic heritability as a tool to evaluate the precision of 24-hour recall dietary questionnaire variables in UK Biobank.

Cole JB, Westerman KE, Manning AK, Florez JC, Hirschhorn JN. Corrigendum: Genetic heritability as a tool to evaluate the precision of 24-hour recall dietary questionnaire variables in UK Biobank. Frontiers in genetics. 2023;14:1202158. doi:10.3389/fgene.2023.1202158

Canonical correlation analysis for multi-omics: Application to cross-cohort analysis.

Jiang MZ, Aguet F, Ardlie K, et al. Canonical correlation analysis for multi-omics: Application to cross-cohort analysis. PLoS genetics. 2023;19(5):e1010517. doi:10.1371/journal.pgen.1010517

Intrinsic mesoscale properties of a Polycomb protein underpin heterochromatin fidelity.

Lee S, Abini-Agbomson S, Perry DS, et al. Intrinsic mesoscale properties of a Polycomb protein underpin heterochromatin fidelity. Nature structural & molecular biology. 2023. doi:10.1038/s41594-023-01000-z