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Publications

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.

van Dijk LR, Walker BJ, Straub TJ, et al. StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities. Genome Biol. 2022;23(1):74. doi:10.1186/s13059-022-02630-0

Cell type-specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis.

Chen R, Liu Y, Djekidel MN, et al. Cell type-specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis. Sci Adv. 2022;8(9):eabm1077. doi:10.1126/sciadv.abm1077

Designing sensitive viral diagnostics with machine learning.

Metsky HC, Welch NL, Pillai PP, et al. Designing sensitive viral diagnostics with machine learning. Nat Biotechnol. 2022. doi:10.1038/s41587-022-01213-5

Fibrillar Collagen Variants in Spontaneous Coronary Artery Dissection.

Zekavat SM, Chou EL, Zekavat M, et al. Fibrillar Collagen Variants in Spontaneous Coronary Artery Dissection. JAMA Cardiol. 2022. doi:10.1001/jamacardio.2022.0001

Emerging enterococcus pore-forming toxins with MHC/HLA-I as receptors.

Xiong X, Tian S, Yang P, et al. Emerging enterococcus pore-forming toxins with MHC/HLA-I as receptors. Cell. 2022. doi:10.1016/j.cell.2022.02.002

Duration of viable virus shedding in SARS-CoV-2 omicron variant infection.

Boucau J, Marino C, Regan J, et al. Duration of viable virus shedding in SARS-CoV-2 omicron variant infection. medRxiv. 2022. doi:10.1101/2022.03.01.22271582

Cancer proteogenomics: current impact and future prospects.

Mani DR, Krug K, Zhang B, et al. Cancer proteogenomics: current impact and future prospects. Nat Rev Cancer. 2022. doi:10.1038/s41568-022-00446-5

Characterization of intrinsically disordered regions in proteins informed by human genetic diversity.

Ahmed SS, Rifat ZT, Lohia R, et al. Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. PLoS Comput Biol. 2022;18(3):e1009911. doi:10.1371/journal.pcbi.1009911

BCOR and BCORL1 Mutations Drive Epigenetic Reprogramming and Oncogenic Signaling by Unlinking PRC1.1 from Target Genes.

Schaefer EJ, Wang HC, Karp HQ, et al. BCOR and BCORL1 Mutations Drive Epigenetic Reprogramming and Oncogenic Signaling by Unlinking PRC1.1 from Target Genes. Blood Cancer Discov. 2022;3(2):116-135. doi:10.1158/2643-3230.BCD-21-0115

Association of the Interaction Between Familial Hypercholesterolemia Variants and Adherence to a Healthy Lifestyle With Risk of Coronary Artery Disease.

Fahed AC, Wang M, Patel AP, et al. Association of the Interaction Between Familial Hypercholesterolemia Variants and Adherence to a Healthy Lifestyle With Risk of Coronary Artery Disease. JAMA Netw Open. 2022;5(3):e222687. doi:10.1001/jamanetworkopen.2022.2687